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Conserved domains on  [gi|2067138855|gb|KAG8003633|]
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Prostaglandin F2-alpha receptor [Nibea albiflora]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tm_GPCRs super family cl28897
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
23-311 8.90e-136

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


The actual alignment was detected with superfamily member cd15145:

Pssm-ID: 475119 [Multi-domain]  Cd Length: 290  Bit Score: 394.19  E-value: 8.90e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  23 ELSVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRI 102
Cdd:cd15145     1 KLSVFFSIIFMTVGILSNSLAIAILMKAYQRFRQKSKASFLLLASGLVITDFFGHLINGTIAVFVYASDKDWIRFDQSNI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd15145    81 LCSVFGICMVFFGLCPLLLGSVMAVERCIGVTKPIFHSTKMTSKHVKMMLSGVCLFAVLVALLPILGHRDYQIQASRTWC 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 183 FFHMEEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLL 262
Cdd:cd15145   161 FYKTEHIEDWEDRFYLLLFSFLGLLALAISFLCNAITGITLLRVKFRSQQHRQGRSHHFEMVIQLLAIMCVSCICWSPFL 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2067138855 263 IHVILLSTRVKNEPASF-SLLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15145   241 VTMANIGINGRDSLESCeTILFALRMATWNQILDPWVYILLRKAVLKNLY 290
NAC_BTF3 cd22055
basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role ...
359-475 1.77e-81

basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role in the transcriptional regulation linked to growth and development in eukaryotes. In mammals, the BTF3 gene encodes two alternative splicing isoforms, BTF3a and BTF3b. The full length BTF3a protein excites transcription. The shortened BTF3b, which lacks the first 44 amino-terminal extension, is a component of the nascent polypeptide-associated complex (NAC), involved in regulating protein localization during translation. BTF3 is involved in oncogenesis; overexpression of BTF3 has been shown to be associated with a variety of malignancies such as cancer of the colon, pancreas, stomach, prostate and breast. It is upregulated in hypopharyngeal squamous cell carcinoma (HSCC) tumors correlating with lymph node metastasis and tumor promotion, thus indicating that BTF3 is a potential therapeutic target and prognostic biomarker for HSCC. BTF3 has also been implicated in the pathogenesis of osteosarcoma (OS), a malignant cancer that affects rapidly proliferating bones, and has a poor prognosis.


:

Pssm-ID: 409234 [Multi-domain]  Cd Length: 117  Bit Score: 248.62  E-value: 1.77e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 359 EKLAKLQAQVRIGGKGSARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTF 438
Cdd:cd22055     1 EKLAKLQAAVRIGGKGTPRRKKKVVHKTATTDDKKLQSTLKKLGVQPIPGIEEVNMFKDDGTVIHFNNPKVQASIAANTF 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2067138855 439 AITGHAETKQLTEMLPGILSQLGADSLSSLRKLAEQF 475
Cdd:cd22055    81 VISGKPETKTLTELLPGILNQLGPENLDNLKKLAEQF 117
 
Name Accession Description Interval E-value
7tmA_FP cd15145
prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G ...
23-311 8.90e-136

prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The PGF2-alpha receptor, also called prostanoid FP receptor, is a class A G-protein coupled receptor whose endogenous ligand is prostaglandin F2-alpha. PGF2-alpha binding to this receptor is coupled to the stimulation of phospholipase C (PLC) pathway via G-protein subunit G(q). This leads to the release of inositol trisphosphate (IP3) and diacylglycerol (DAG) which results in increased intracellular Ca2+ levels and activation of PKC. The receptor activation primarily induces uterine contraction and bronchoconstriction, and stimulates luteolysis. Like most prostanoid receptors, the PGF2-alpha receptor has also been implicated in tumor angiogenesis and metastasis.


Pssm-ID: 320273 [Multi-domain]  Cd Length: 290  Bit Score: 394.19  E-value: 8.90e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  23 ELSVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRI 102
Cdd:cd15145     1 KLSVFFSIIFMTVGILSNSLAIAILMKAYQRFRQKSKASFLLLASGLVITDFFGHLINGTIAVFVYASDKDWIRFDQSNI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd15145    81 LCSVFGICMVFFGLCPLLLGSVMAVERCIGVTKPIFHSTKMTSKHVKMMLSGVCLFAVLVALLPILGHRDYQIQASRTWC 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 183 FFHMEEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLL 262
Cdd:cd15145   161 FYKTEHIEDWEDRFYLLLFSFLGLLALAISFLCNAITGITLLRVKFRSQQHRQGRSHHFEMVIQLLAIMCVSCICWSPFL 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2067138855 263 IHVILLSTRVKNEPASF-SLLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15145   241 VTMANIGINGRDSLESCeTILFALRMATWNQILDPWVYILLRKAVLKNLY 290
NAC_BTF3 cd22055
basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role ...
359-475 1.77e-81

basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role in the transcriptional regulation linked to growth and development in eukaryotes. In mammals, the BTF3 gene encodes two alternative splicing isoforms, BTF3a and BTF3b. The full length BTF3a protein excites transcription. The shortened BTF3b, which lacks the first 44 amino-terminal extension, is a component of the nascent polypeptide-associated complex (NAC), involved in regulating protein localization during translation. BTF3 is involved in oncogenesis; overexpression of BTF3 has been shown to be associated with a variety of malignancies such as cancer of the colon, pancreas, stomach, prostate and breast. It is upregulated in hypopharyngeal squamous cell carcinoma (HSCC) tumors correlating with lymph node metastasis and tumor promotion, thus indicating that BTF3 is a potential therapeutic target and prognostic biomarker for HSCC. BTF3 has also been implicated in the pathogenesis of osteosarcoma (OS), a malignant cancer that affects rapidly proliferating bones, and has a poor prognosis.


Pssm-ID: 409234 [Multi-domain]  Cd Length: 117  Bit Score: 248.62  E-value: 1.77e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 359 EKLAKLQAQVRIGGKGSARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTF 438
Cdd:cd22055     1 EKLAKLQAAVRIGGKGTPRRKKKVVHKTATTDDKKLQSTLKKLGVQPIPGIEEVNMFKDDGTVIHFNNPKVQASIAANTF 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2067138855 439 AITGHAETKQLTEMLPGILSQLGADSLSSLRKLAEQF 475
Cdd:cd22055    81 VISGKPETKTLTELLPGILNQLGPENLDNLKKLAEQF 117
NAC pfam01849
NAC domain;
393-446 1.82e-25

NAC domain;


Pssm-ID: 426474  Cd Length: 54  Bit Score: 98.69  E-value: 1.82e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2067138855 393 KLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAET 446
Cdd:pfam01849   1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
7tm_1 pfam00001
7 transmembrane receptor (rhodopsin family); This family contains, amongst other ...
40-299 7.20e-25

7 transmembrane receptor (rhodopsin family); This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins.


Pssm-ID: 459624 [Multi-domain]  Cd Length: 256  Bit Score: 103.53  E-value: 7.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  40 NSLALFILVksYNRiRIKSKASFLLFasSLVVTDLLGHLINGSLVLFVYSSHKKWEMfdpHRIVCSIFGACMVFFGLSPL 119
Cdd:pfam00001   2 NLLVILVIL--RNK-KLRTPTNIFLL--NLAVADLLFSLLTLPFWLVYYLNHGDWPF---GSALCKIVGALFVVNGYASI 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 120 FLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLL-WRPYEVQSSRSWCFFHMEEPKDWLDVLLP 198
Cdd:pfam00001  74 LLLTAISIDRYLAIVHPLRYKRRRTPRRAKVLILVIWVLALLLSLPPLLFgWTLTVPEGNVTVCFIDFPEDLSKPVSYTL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 199 LLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYH--IEMicqLLVIMLVSCVCWGPLLIHVILLSTRVKNEP 276
Cdd:pfam00001 154 LISVLGFLLPLLVILVCYTLIIRTLRKSASKQKSSERTQRRRkaLKT---LAVVVVVFILCWLPYHIVNLLDSLALDCEL 230
                         250       260
                  ....*....|....*....|....*.
gi 2067138855 277 ASF---SLLMVVRMATWNQILDPWVY 299
Cdd:pfam00001 231 SRLldkALSVTLWLAYVNSCLNPIIY 256
 
Name Accession Description Interval E-value
7tmA_FP cd15145
prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G ...
23-311 8.90e-136

prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The PGF2-alpha receptor, also called prostanoid FP receptor, is a class A G-protein coupled receptor whose endogenous ligand is prostaglandin F2-alpha. PGF2-alpha binding to this receptor is coupled to the stimulation of phospholipase C (PLC) pathway via G-protein subunit G(q). This leads to the release of inositol trisphosphate (IP3) and diacylglycerol (DAG) which results in increased intracellular Ca2+ levels and activation of PKC. The receptor activation primarily induces uterine contraction and bronchoconstriction, and stimulates luteolysis. Like most prostanoid receptors, the PGF2-alpha receptor has also been implicated in tumor angiogenesis and metastasis.


Pssm-ID: 320273 [Multi-domain]  Cd Length: 290  Bit Score: 394.19  E-value: 8.90e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  23 ELSVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRI 102
Cdd:cd15145     1 KLSVFFSIIFMTVGILSNSLAIAILMKAYQRFRQKSKASFLLLASGLVITDFFGHLINGTIAVFVYASDKDWIRFDQSNI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd15145    81 LCSVFGICMVFFGLCPLLLGSVMAVERCIGVTKPIFHSTKMTSKHVKMMLSGVCLFAVLVALLPILGHRDYQIQASRTWC 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 183 FFHMEEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLL 262
Cdd:cd15145   161 FYKTEHIEDWEDRFYLLLFSFLGLLALAISFLCNAITGITLLRVKFRSQQHRQGRSHHFEMVIQLLAIMCVSCICWSPFL 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2067138855 263 IHVILLSTRVKNEPASF-SLLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15145   241 VTMANIGINGRDSLESCeTILFALRMATWNQILDPWVYILLRKAVLKNLY 290
7tmA_PGE2_EP1 cd15144
prostaglandin E2 receptor EP1 subtype, member of the class A family of seven-transmembrane G ...
25-311 7.08e-102

prostaglandin E2 receptor EP1 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP1, also called prostanoid EP1 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. It has been shown that stimulation of the EP1 receptor by PGE2 causes smooth muscle contraction and increased intracellular Ca2+ levels; however, it is still unclear whether EP1 receptor is exclusively coupled to G(q/11), which leading to activation of phospholipase C and phosphatidylinositol hydrolysis. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320272 [Multi-domain]  Cd Length: 294  Bit Score: 307.86  E-value: 7.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHrIVC 104
Cdd:cd15144     3 SPAMPIFSMTLGALSNIVALVILAQSYARFRRRSKATFLLFASSLVLTDLAGHVIPGALVLRLYLSGQMPAEEPRG-ALC 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 105 SIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFF 184
Cdd:cd15144    82 QFFGACMVFFGLCPLFLGCAMAVERCVGVTRPLLHSSVVTTTRTKLSLLAIWAVALAVALLPLFRFGRYKPQFPGTWCFI 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 185 HMEEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHC---RGTSYHIEMICQLLVIMLVSCVCWGPL 261
Cdd:cd15144   162 KVQPPGSWADVAFALLFSLLGLASLLVSLVCNTISGLTLVRARLRKKCSCsnrRAKSHDIEMVVQLVGIMVVSCICWSPL 241
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2067138855 262 LIHVIL-LSTRVKNEPASFS--LLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15144   242 LIFVLIsVSRSYERPKHQYEklLFLGVRLASWNQILDPWVYILLRRAVLRKVL 294
7tmA_Prostanoid_R cd14981
G protein-coupled receptors for prostanoids, member of the class A family of ...
25-311 7.05e-87

G protein-coupled receptors for prostanoids, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320112 [Multi-domain]  Cd Length: 288  Bit Score: 269.12  E-value: 7.05e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILVKSYNRIRiksKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWemfDPHRIVC 104
Cdd:cd14981     3 SPAPPALMFVFGVLGNLLALIVLARSSKSHK---WSVFYRLVAGLAITDLLGILLTSPVVLAVYASNFEW---DGGQPLC 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 105 SIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFF 184
Cdd:cd14981    77 DYFGFMMSFFGLSSLLIVCAMAVERFLAITHPFFYNSHVKKRRARLMLGAVWAFALLIASLPLLGLGSYVLQYPGTWCFL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 185 HMeEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYH-------IEMICQLLVIMLVSCVC 257
Cdd:cd14981   157 DF-YSKNTGDAAYAYLYSILGLLILLVTLLCNLLVIITLLRMRRRKKRHRRSRRSArrqkrneIQMVVLLLAITVVFSVC 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2067138855 258 WGPLLIHVILLST--RVKNEPAsfsLLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd14981   236 WLPLMIRVLINATgdSEKNGKT---DLLAVRMASWNQILDPWVYILLRKEVLRRLY 288
NAC_BTF3 cd22055
basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role ...
359-475 1.77e-81

basal transcription factor BTF3; Basal transcription factor 3 (BTF3) plays an important role in the transcriptional regulation linked to growth and development in eukaryotes. In mammals, the BTF3 gene encodes two alternative splicing isoforms, BTF3a and BTF3b. The full length BTF3a protein excites transcription. The shortened BTF3b, which lacks the first 44 amino-terminal extension, is a component of the nascent polypeptide-associated complex (NAC), involved in regulating protein localization during translation. BTF3 is involved in oncogenesis; overexpression of BTF3 has been shown to be associated with a variety of malignancies such as cancer of the colon, pancreas, stomach, prostate and breast. It is upregulated in hypopharyngeal squamous cell carcinoma (HSCC) tumors correlating with lymph node metastasis and tumor promotion, thus indicating that BTF3 is a potential therapeutic target and prognostic biomarker for HSCC. BTF3 has also been implicated in the pathogenesis of osteosarcoma (OS), a malignant cancer that affects rapidly proliferating bones, and has a poor prognosis.


Pssm-ID: 409234 [Multi-domain]  Cd Length: 117  Bit Score: 248.62  E-value: 1.77e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 359 EKLAKLQAQVRIGGKGSARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTF 438
Cdd:cd22055     1 EKLAKLQAAVRIGGKGTPRRKKKVVHKTATTDDKKLQSTLKKLGVQPIPGIEEVNMFKDDGTVIHFNNPKVQASIAANTF 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2067138855 439 AITGHAETKQLTEMLPGILSQLGADSLSSLRKLAEQF 475
Cdd:cd22055    81 VISGKPETKTLTELLPGILNQLGPENLDNLKKLAEQF 117
7tmA_TXA2_R cd15143
thromboxane A2 receptor, member of the class A family of seven-transmembrane G protein-coupled ...
25-311 4.41e-69

thromboxane A2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The thromboxane receptor, also known as the prostanoid TP receptor, is a class A G-protein coupled receptor whose endogenous ligand is thromboxane A2 (TXA2). TXA2 is the major product of cyclooxygenase metabolite of arachidonic acid that found predominantly in platelets and stimulates platelet aggregation, Ca2+ influx into platelets, and also causes vasoconstriction. TXA2 has been shown to be involved in immune regulation, angiogenesis and metastasis, among many others. Activation of TXA2 receptor is coupled to G(q) and G(13), resulting in the activations of phospholipase C and RhoGEF, respectively. TXA2 receptor is widely distributed in the body and is abundantly expressed in thymus and spleen.


Pssm-ID: 320271 [Multi-domain]  Cd Length: 296  Bit Score: 223.54  E-value: 4.41e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIVC 104
Cdd:cd15143     3 SVWFSTIFSAIGLASNLFAFIVLVKSSRKTKSRSRSSFLIFLCGLVVTDFLGLLVTGTIVISFHLTNFNWRVVDPDCYLC 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 105 SIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFF 184
Cdd:cd15143    83 NFMGLSMVFYGLCPLLLGATMAVERFFGINRPFSRSTAMSKRRAWYMVGMVWAFAFLLGLLPILGLGRYTLQYPGSWCFL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 185 HMEEpkDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLLIH 264
Cdd:cd15143   163 TLLF--DSKDVAFGLLFSFLGILSVGLSFLLNTVSVVTLCRVYHDRESVQRRRDSEVEMMVQLLGIMVIASVCWLPLLVF 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2067138855 265 VIllSTRVKNEPASF-----------SLLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15143   241 IA--QTVLQKPPAMLlagqiprltekKLLIYLRFATWNQILDPWVYILFRRAVLKRLY 296
7tmA_PGE2_EP3 cd15146
prostaglandin E2 receptor EP3 subtype, member of the class A family of seven-transmembrane G ...
24-309 2.06e-51

prostaglandin E2 receptor EP3 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP3, also called prostanoid EP3 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Stimulation of the EP3 receptor by PGE2 preferentially couples to G(i) protein. This leads to a decrease in adenylate cyclase activity, thereby decreasing cAMP levels, which subsequently produces smooth muscle contraction. Knockout mice studies suggest that the EP3 receptor may act as a systemic vasopressor. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320274 [Multi-domain]  Cd Length: 308  Bit Score: 177.38  E-value: 2.06e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIV 103
Cdd:cd15146     2 VSVAFPITMMITGMVGNALAMLLVYRSYRKKENKRKRSFLLCIGSLALTDLFGQLLTSPIVISVYLSDRKWERVDPSGRL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 104 CSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCF 183
Cdd:cd15146    82 CPFFGLCMTVFGLCPLFIASAMAIERALAIRAPHWYSSHMKTRVTKAVLLGIWLAVLAFALLPIAGVGQYTLQWPGTWCF 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 184 FHMEEpKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLqARLRRKHHCRGTSYH-----IEMICQLLVIMLVSCVCW 258
Cdd:cd15146   162 ISTGD-GEPGNNFFASTFASLGLFSLCVTFSCNLATIRALV-SRCKTKAGASVSSKQweritTETLIQLLGIMCVLSACW 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2067138855 259 GPLLIHVI-LLSTRV--------KNEPASFSL-------LMVVRMATWNQILDPWVYILLRKAVLRK 309
Cdd:cd15146   240 SPLLVLMLkMISNHTssehcksaTAPPQSTELqkdcnffLTAVRLASLNQILDPWVYLLLRKILLRK 306
7tmA_PGE2_EP2 cd15139
prostaglandin E2 receptor EP2 subtype, member of the class A family of seven-transmembrane G ...
25-310 3.96e-27

prostaglandin E2 receptor EP2 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP2, also called prostanoid EP2 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Stimulation of the EP2 receptor by PGE2 causes cAMP accumulation through G(s) protein activation, which subsequently produces smooth muscle relaxation and mediates the systemic vasodepressor response to PGE2. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320267 [Multi-domain]  Cd Length: 299  Bit Score: 111.02  E-value: 3.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILVKSYNRIRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIVC 104
Cdd:cd15139     3 SPAISALMFSAGVLGNVLALVLLERRRRKEVGRRQSLFHVLVTSLVITDLLGTCLISPVVLASYSRNTTLVGMSPNRLVC 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 105 SIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFF 184
Cdd:cd15139    83 GYFGFAMTFFSLATMLILLAMALERCLSIGHPYFYERYVSKRCGYVTIPLIYLLCALFCLFPFLGFGKYVQYCPGTWCFI 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 185 HMeEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHH-------CRGTSYHIEMICQ-----LLVIML 252
Cdd:cd15139   163 DM-NPEASEHRAYANLYATLLLLLIVAVVLCNASVIYHLVRMYRRRKRNrssvggrARSHRRRFSMAEEvehliLLVFMT 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2067138855 253 VS-CVCWGPLLIHV----ILLSTRVKNEpasfslLMVVRMATWNQILDPWVYILLRKAVLRKM 310
Cdd:cd15139   242 IIfVICSLPLTIQVymntFSDSENHKWD------LIALRFLSVNPIIDPWVFIILSPPVLRLL 298
7tmA_PGE2_EP4 cd15142
prostaglandin E2 receptor EP4 subtype, member of the class A family of seven-transmembrane G ...
25-309 1.13e-25

prostaglandin E2 receptor EP4 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP4, also called prostanoid EP4 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Like the EP2 receptor, stimulation of the EP4 receptor by PGE2 causes cAMP accumulation through G(s) protein activation. Knockout studies in mice suggest that EP4 receptor may be involved in the maintenance of bone mass and fracture healing. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320270 [Multi-domain]  Cd Length: 302  Bit Score: 106.82  E-value: 1.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILVKSYnriRIKSKASFLLFASSLVVTDLLGHLINGSLVLFVYSShKKWEMFDPhriVC 104
Cdd:cd15142     3 PPTIPAVMFIFGVVGNLIAIVVLCKSR---KEQKETTFYTLVCGLAVTDLLGTCLASPVTIATYLK-GRWPGGQP---LC 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 105 SIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHStaiasHHMKRLLGLTWLLAALVA-----VFPLLLWRPYEVQSSR 179
Cdd:cd15142    76 EYFSFILLFFSLSGLSIICAMSIERYLAINHAYFYN-----HYVDKRLAGLTLFAIYASnilfcALPSMGLGKSKLQYPK 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 180 SWCFFhmeepkDW-----LDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQAR------------------LRRKHHCRG 236
Cdd:cd15142   151 TWCFI------DWrtnvsVHAAYSYMYAGFSSLLILVTVLCNVLVCGALIRMHrqfvrrtslgtdqrlsdfRRRRSFRRM 224
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2067138855 237 TSYHIEMICQLLVIMLVSCVCWGPLLIHVI---LLSTRVKNEPASFSLLMVVRMATWNQILDPWVYILLRKAVLRK 309
Cdd:cd15142   225 AGAEIQMVILLIATSVVVLICSIPLVVRVFvnqLYQPAVEKDLDKNPDLQAIRIASVNPILDPWIYILLRKTVLSK 300
NAC pfam01849
NAC domain;
393-446 1.82e-25

NAC domain;


Pssm-ID: 426474  Cd Length: 54  Bit Score: 98.69  E-value: 1.82e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2067138855 393 KLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAET 446
Cdd:pfam01849   1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
7tm_1 pfam00001
7 transmembrane receptor (rhodopsin family); This family contains, amongst other ...
40-299 7.20e-25

7 transmembrane receptor (rhodopsin family); This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins.


Pssm-ID: 459624 [Multi-domain]  Cd Length: 256  Bit Score: 103.53  E-value: 7.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  40 NSLALFILVksYNRiRIKSKASFLLFasSLVVTDLLGHLINGSLVLFVYSSHKKWEMfdpHRIVCSIFGACMVFFGLSPL 119
Cdd:pfam00001   2 NLLVILVIL--RNK-KLRTPTNIFLL--NLAVADLLFSLLTLPFWLVYYLNHGDWPF---GSALCKIVGALFVVNGYASI 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 120 FLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLL-WRPYEVQSSRSWCFFHMEEPKDWLDVLLP 198
Cdd:pfam00001  74 LLLTAISIDRYLAIVHPLRYKRRRTPRRAKVLILVIWVLALLLSLPPLLFgWTLTVPEGNVTVCFIDFPEDLSKPVSYTL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 199 LLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYH--IEMicqLLVIMLVSCVCWGPLLIHVILLSTRVKNEP 276
Cdd:pfam00001 154 LISVLGFLLPLLVILVCYTLIIRTLRKSASKQKSSERTQRRRkaLKT---LAVVVVVFILCWLPYHIVNLLDSLALDCEL 230
                         250       260
                  ....*....|....*....|....*.
gi 2067138855 277 ASF---SLLMVVRMATWNQILDPWVY 299
Cdd:pfam00001 231 SRLldkALSVTLWLAYVNSCLNPIIY 256
7tmA_PGI2 cd15141
prostaglandin I2 receptor, member of the class A family of seven-transmembrane G ...
29-310 2.67e-23

prostaglandin I2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin I2 receptor (also called prostacyclin receptor or prostanoid IP receptor) is a class A, G protein-coupled receptor whose endogenous ligand is prostacyclin, which is the major product of cyclooxygenase metabolite of arachidonic acid that found predominantly in platelets and vascular smooth muscle cells (VSMCs). The PGI2 receptor is coupled to both G(s) and G(q) protein subtypes, resulting in increased cAMP formation, phosphoinositide turnover, and Ca2+ signaling. PGI2 receptor activation by prostacyclin induces VSMC differentiation and produces a potent vasodilation and inhibition of platelet aggregation.


Pssm-ID: 320269 [Multi-domain]  Cd Length: 301  Bit Score: 99.89  E-value: 2.67e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  29 SIISMTVGILSNSLALFILVKSYNRIRIKSKAsFLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIVCSIFG 108
Cdd:cd15141     7 STLMFAAGVVGNLLALGILGVHRKERRTKSSA-FCVLVTGLAATDLLGTCFLSPMVFVSYAQNSSLLGLAAGQPLCHLFA 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 109 ACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFFHMEE 188
Cdd:cd15141    86 FAMTFFGLASMLILFAMAVERCLAISHPYFYAQHSGRRLAKLALPAIYAFGALFCALPLLGVGRHKQYCPGTWCFIRMTV 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 189 PKDWL--DVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHH------CRGTSY-------HIEMICQLLVIMLV 253
Cdd:cd15141   166 PGHREpgSLAFSLLYASLMALLIAAIFLCNGSVTVSLCRMYRGQKARrgslrrCGRLGWwlgqgeeEVDHLILLALMTVI 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2067138855 254 SCVCWGPLLIHVILLS-TRVKNEPASfslLMVVRMATWNQILDPWVYILLRKAVLRKM 310
Cdd:cd15141   246 FVVCSLPLTIRAFLGAiAPDGNESGD---LLAFRFSAFNPILDPWIFIIFRKAVFRKL 300
7tm_classA_rhodopsin-like cd00637
rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor ...
26-302 1.01e-20

rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor superfamily; Class A rhodopsin-like receptors constitute about 90% of all GPCRs. The class A GPCRs include the light-sensitive rhodopsin as well as receptors for biogenic amines, lipids, nucleotides, odorants, peptide hormones, and a variety of other ligands. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. Based on sequence similarity, GPCRs can be divided into six major classes: class A (rhodopsin-like family), class B (Methuselah-like, adhesion and secretin-like receptor family), class C (metabotropic glutamate receptor family), class D (fungal mating pheromone receptors), class E (cAMP receptor family), and class F (frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


Pssm-ID: 410626 [Multi-domain]  Cd Length: 275  Bit Score: 91.97  E-value: 1.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  26 VTASIISMTVGILSNSLALFILVKSYNRiriKSKASFLLFasSLVVTDLLGHLINGSLVLFVYSSHKKWemfdPHRIVCS 105
Cdd:cd00637     2 AVLYILIFVVGLVGNLLVILVILRNRRL---RTVTNYFIL--NLAVADLLVGLLVIPFSLVSLLLGRWW----FGDALCK 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 106 IFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFFH 185
Cdd:cd00637    73 LLGFLQSVSLLASILTLTAISVDRYLAIVHPLRYRRRFTRRRAKLLIALIWLLSLLLALPPLLGWGVYDYGGYCCCCLCW 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 186 MEEPKD--------WLDVLLPLLFsMlgllalllsIVCNTLTSCALLQARLRRKHHCRGTSY------HIEMICQLLVIM 251
Cdd:cd00637   153 PDLTLSkaytiflfVLLFLLPLLV-I---------IVCYVRIFRKLRRHRRRIRSSSSNSSRrrrrrrERKVTKTLLIVV 222
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2067138855 252 LVSCVCWGPLLIHVILLSTRVKNEPASFSLLMVVRMATW-NQILDPWVYILL 302
Cdd:cd00637   223 VVFLLCWLPYFILLLLDVFGPDPSPLPRILYFLALLLAYlNSAINPIIYAFF 274
7tmA_PGD2 cd15140
prostaglandin D2 receptor, member of the class A family of seven-transmembrane G ...
25-311 4.68e-17

prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin D2 receptor (also called prostanoid DP receptor, DP1, or PGD2R1) is a G-protein coupled receptor whose endogenous ligand is prostaglandin D2 (PGD2). PGD2, the major cyclooxygenase metabolite of arachidonic acid produced by mast cells, mediates inflammatory reactions in response to allergen challenge and causes peripheral vasodilation. PGD2 exerts its biological effects by binding to two types of cell surface receptors: a DP1 receptor that belongs to the prostanoid receptor family and a chemoattractant receptor-homologous molecule expressed on the T-helper type 2 cells (CRTH2 or PD2R2).


Pssm-ID: 320268 [Multi-domain]  Cd Length: 312  Bit Score: 81.87  E-value: 4.68e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFIL----VKSYNRIRIKSKAS-FLLFASSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDP 99
Cdd:cd15140     3 SVVSSSLLFAAGLLGNLLALGLLwlhkLHAKKQRGGRPRTSvFYVLVTVLTVTDLLGKCLLSPVVLAAYAQNRSLVGLTP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 100 --HRIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQS 177
Cdd:cd15140    83 agNLNLCQVFAFLMIFFGLASTFILLAMALECWLSLGHPFFYQRHINKRLGALVSLILYAFCLGFCALPFFGFGRYVQYC 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 178 SRSWCFFHMEEPKDWLDVLL-PLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYH--------------IE 242
Cdd:cd15140   163 PGTWCFIQMTAEESSTSALAySVLYGSLMGLLVLAIVLCNLGIMRNLYQMYRRENEKGIPSTDLqgaaafprqqepagME 242
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2067138855 243 MICQLLVIMLVSC---VCWGPLLIHVILLSTR-VKNEPASfslLMVVRMATWNQILDPWVYILLRKAVLRKMF 311
Cdd:cd15140   243 ELEHLILLALMTVlftACSLPVIARAYVGAFKgEKNEAAD---LTALRFLSVNSIVDPWIFIIFRTSKFRGFL 312
7tmA_Opsins_type2_animals cd14969
type 2 opsins in animals, member of the class A family of seven-transmembrane G ...
24-182 1.15e-15

type 2 opsins in animals, member of the class A family of seven-transmembrane G protein-coupled receptors; This rhodopsin family represents the type 2 opsins found in vertebrates and invertebrates except sponge. Type 2 opsins primarily function as G protein coupled receptors and are responsible for vision as well as for circadian rhythm and pigment regulation. On the contrary, type 1 opsins such as bacteriorhodopsin and proteorhodopsin are found in both prokaryotic and eukaryotic microbes, functioning as light-gated ion channels, proton pumps, sensory receptors and in other unknown functions. Although these two opsin types share seven-transmembrane domain topology and a conserved lysine reside in the seventh helix, type 1 opsins do not activate G-proteins and are not evolutionarily related to type 2. Type 2 opsins can be classified into six distinct subfamilies including the vertebrate opsins/encephalopsins, the G(o) opsins, the G(s) opsins, the invertebrate G(q) opsins, the photoisomerases, and the neuropsins.


Pssm-ID: 381741 [Multi-domain]  Cd Length: 284  Bit Score: 77.25  E-value: 1.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISmTVGILSNSLALFILVKSYNRiriKSKASFLLFasSLVVTDLLgHLINGSLVLFVYSSHKKWEMFDPhriV 103
Cdd:cd14969     3 LAVYLSLIG-VLGVVLNGLVIIVFLKKKKL---RTPLNLFLL--NLALADLL-MSVVGYPLSFYSNLSGRWSFGDP---G 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2067138855 104 CSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFhSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd14969    73 CVIYGFAVTFLGLVSISTLAALAFERYLVIVRPLK-AFRLSKRRALILIAFIWLYGLFWALPPLFGWSSYVPEGGGTSC 150
NAC cd21114
NAC domain; This family contains the NAC domain, named after the nascent ...
406-448 5.73e-13

NAC domain; This family contains the NAC domain, named after the nascent polypeptide-associated complex (NAC) whose subunits contain NAC domains. In eukaryotes, the NAC complex, which plays an important role in co-translational targeting of nascent polypeptides to endoplasmic reticulum (ER), consists of 2 subunits: NAC alpha and a shortened splice variant of the basal transcription factor 3 (BTF3; also called BTF3b or NAC beta). The full length BTF3a protein excites transcription.


Pssm-ID: 409232  Cd Length: 43  Bit Score: 63.09  E-value: 5.73e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2067138855 406 IAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQ 448
Cdd:cd21114     1 IPGIEEVTMVMEDGSVIVFTMPKVQASLASNVFVVTGEATREQ 43
7tmA_purinoceptor-like cd14982
purinoceptor and its related proteins, member of the class A family of seven-transmembrane G ...
35-310 1.11e-11

purinoceptor and its related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; Members of this subfamily include lysophosphatidic acid receptor, P2 purinoceptor, protease-activated receptor, platelet-activating factor receptor, Epstein-Barr virus induced gene 2, proton-sensing G protein-coupled receptors, GPR35, and GPR55, among others. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 341318 [Multi-domain]  Cd Length: 283  Bit Score: 65.36  E-value: 1.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILVksyNRIRIKSKASFLLFasSLVVTDLLgHLINGSLVLFVYSSHKKWEMFDphrIVCSIFGACMVF- 113
Cdd:cd14982    13 LGLLGNILALWVFL---RKMKKRSPTTIYMI--NLALADLL-FVLTLPFRIYYYLNGGWWPFGD---FLCRLTGLLFYIn 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 114 FGLSPLFLGsAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLWRPYEVQSSRSW-CFFHMEEPKDW 192
Cdd:cd14982    84 MYGSILFLT-CISVDRYLAVVHPLKSRRLRRKRYAVGVCAGVWILVLVASV-PLLLLRSTIAKENNSTtCFEFLSEWLAS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 193 LDVLLPLLFSMLGLLALLLSIVCNTLTSCALlqarLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGP----LLIHVILL 268
Cdd:cd14982   162 AAPIVLIALVVGFLIPLLIILVCYSLIIRAL----RRRSKQSQKSVRKRKALRMILIVLAVFLVCFLPyhvtRILYLLVR 237
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2067138855 269 STRVKNEPASFSLLMVVR----MATWNQILDPWVYILLRKAVLRKM 310
Cdd:cd14982   238 LSFIADCSARNSLYKAYRitlcLASLNSCLDPLIYYFLSKTFRKRL 283
7tmA_Melanopsin-like cd15083
vertebrate melanopsins and related opsins, member of the class A family of seven-transmembrane ...
24-181 2.73e-10

vertebrate melanopsins and related opsins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group represent the Gq-coupled rhodopsin subfamily consists of melanopsins, insect photoreceptors R1-R6, invertebrate Gq opsins as well as their closely related opsins. Melanopsins (also called Opsin-4) are the primary photoreceptor molecules for non-visual functions such as the photo-entrainment of the circadian rhythm and pupillary constriction in mammals. Mammalian melanopsins are expressed only in the inner retina, whereas non-mammalian vertebrate melanopsins are localized in various extra-retinal tissues such as iris, brain, pineal gland, and skin. The outer photoreceptors (R1-R6) are the insect Drosophila equivalent to the vertebrate rods and are responsible for image formation and motion detection. The invertebrate G(q) opsins includes the arthropod and mollusk visual opsins as well as invertebrate melanopsins, which are also found in vertebrates. Arthropods possess color vision by the use of multiple opsins sensitive to different light wavelengths. Members of this subfamily belong to the class A of the G protein-coupled receptors and have seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320211 [Multi-domain]  Cd Length: 291  Bit Score: 61.19  E-value: 2.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISMtVGILSNSLALFILVKSyNRIRIKSKasflLFASSLVVTDLLGHLINGSLvlFVYSS-HKKWeMFDPhrI 102
Cdd:cd15083     3 LGIFILIIGL-IGVVGNGLVIYAFCRF-KSLRTPAN----YLIINLAISDFLMCILNCPL--MVISSfSGRW-IFGK--T 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLW---RPYEVQSSR 179
Cdd:cd15083    72 GCDMYGFSGGLFGIMSINTLAAIAVDRYLVITRPMKASVRISHRRALIVIAVVWLYSLLWVLPPLFGWsryVLEGLLTSC 151

                  ..
gi 2067138855 180 SW 181
Cdd:cd15083   152 SF 153
7tmA_EDG-like cd14972
endothelial differentiation gene family, member of the class A family of seven-transmembrane G ...
28-299 7.62e-10

endothelial differentiation gene family, member of the class A family of seven-transmembrane G protein-coupled receptors; This group represents the endothelial differentiation gene (Edg) family of G-protein coupled receptors, melanocortin/ACTH receptors, and cannabinoid receptors as well as their closely related receptors. The Edg GPCRs bind blood borne lysophospholipids including sphingosine-1-phosphate (S1P) and lysophosphatidic acid (LPA), which are involved in the regulation of cell proliferation, survival, migration, invasion, endothelial cell shape change and cytoskeletal remodeling. The Edg receptors are classified into two subfamilies: the lysophosphatidic acid subfamily that includes LPA1 (Edg2), LPA2 (Edg4), and LPA3 (Edg7); and the S1P subfamily that includes S1P1 (Edg1), S1P2 (Edg5), S1P3 (Edg3), S1P4 (Edg6), and S1P5 (Edg8). Melanocortin receptors bind a group of pituitary peptide hormones known as melanocortins, which include adrenocorticotropic hormone (ACTH) and the different isoforms of melanocyte-stimulating hormones. Two types of cannabinoid receptors, CB1 and CB2, are activated by naturally occurring endocannabinoids, cannabis plant-derived cannabinoids such as tetrahydrocannabinol, or synthetic cannabinoids. The CB receptors are involved in the various physiological processes such as appetite, mood, memory, and pain sensation. CB1 receptor is expressed predominantly in central and peripheral neurons, while CB2 receptor is found mainly in the immune system.


Pssm-ID: 341317 [Multi-domain]  Cd Length: 275  Bit Score: 59.61  E-value: 7.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  28 ASIISMTVGILSNSLALFILVKSynriRIKSKASFLLFASsLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIVCSIF 107
Cdd:cd14972     4 VAIVLGVFIVVENSLVLAAIIKN----RRLHKPMYILIAN-LAAADLLAGIAFVFTFLSVLLVSLTPSPATWLLRKGSLV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 108 GAcmvffGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEV-QSSRSWCFFHM 186
Cdd:cd14972    79 LS-----LLASAYSLLAIAVDRYISIVHGLTYVNNVTNKRVKVLIALVWVWSVLLALLPVLGWNCVLCdQESCSPLGPGL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 187 eePKD----WLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHhcRGTSyhIEMICQLLVIMLVSCVCWGPLL 262
Cdd:cd14972   154 --PKSylvlILVFFFIALVIIVFLYVRIFWCLWRHANAIAARQEAAVPAQ--PSTS--RKLAKTVVIVLGVFLVCWLPLL 227
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2067138855 263 IHVILLS--TRVKNEPASFSLLMVvrMATWNQILDPWVY 299
Cdd:cd14972   228 ILLVLDVlcPSVCDIQAVFYYFLV--LALLNSAINPIIY 264
7tmA_GPRnna14-like cd15001
GPRnna14 and related proteins, member of the class A family of seven-transmembrane G ...
26-304 8.45e-09

GPRnna14 and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes the orphan G-protein coupled receptor GPRnna14 found in body louse (Pediculus humanus humanus) as well as its closely related proteins of unknown function. These receptors are members of the class A rhodopsin-like G-protein coupled receptors. As an obligatory parasite of humans, the body louse is an important vector for human diseases, including epidemic typhus, relapsing fever, and trench fever. GPRnna14 shares significant sequence similarity with the members of the neurotensin receptor family. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320132 [Multi-domain]  Cd Length: 266  Bit Score: 56.52  E-value: 8.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  26 VTASIIsMTVGILSNSLALFILVKSynrIRIKSKASFLLfaSSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPHRIVCS 105
Cdd:cd15001     4 IVYVIT-FVLGLIGNSLVIFVVARF---RRMRSVTNVFL--ASLATADLLLLVFCVPLKTAEYFSPTWSLGAFLCKAVAY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 106 IFGACMVffglSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLWRPYEVQSSR-----S 180
Cdd:cd15001    78 LQLLSFI----CSVLTLTAISIERYYVILHPMKAKSFCTIGRARKVALLIWILSAILAS-PVLFGQGLVRYESEngvtvY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 181 WCFfhmeepKDWLDVLLPLLFSMLGLlalllsIVCNTLTSCALLQARLRRKHhcrgtsyhIEMICQLLVIMLVSCVCWGP 260
Cdd:cd15001   153 HCQ------KAWPSTLYSRLYVVYLA------IVIFFIPLIVMTFAYARDTR--------KQVIKMLISVVVLFAVCWGP 212
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2067138855 261 LLIHVILLSTRVKNEPASFSLLMVVR----MATWNQILDPWVYILLRK 304
Cdd:cd15001   213 LLIDNLLVSFDVISTLHTQALKYMRIafhlLSYANSCINPIIYAFMSK 260
7tmA_PD2R2_CRTH2 cd15118
prostaglandin D2 receptor, member of the class A family of seven-transmembrane G ...
25-301 2.18e-08

prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin D2 receptor, also known as CRTH2, is a chemoattractant G-protein coupled receptor expressed on T helper type 2 cells that binds prostaglandin D2 (PGD2). PGD2 functions as a mast cell-derived mediator to trigger asthmatic responses and also causes vasodilation. PGD2 exerts its inflammatory effects by binding to two G-protein coupled receptors, the D-type prostanoid receptor (DP) and PD2R2 (CRTH2). PD2R2 couples to the G protein G(i/o) type which leads to a reduction in intracellular cAMP levels and an increase in intracellular calcium. PD2R2 is involved in mediating chemotaxis of Th2 cells, eosinophils, and basophils generated during allergic inflammatory processes. CRTH2 (PD2R2), but not DP receptor, undergoes agonist-induced internalization which is one of key processes that regulates the signaling of the GPCR.


Pssm-ID: 320246 [Multi-domain]  Cd Length: 284  Bit Score: 55.58  E-value: 2.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMTVGILSNSLALFILvksYNRIRiKSKASFLLFasSLVVTDLLGHLingSLVLFVY--SSHKKWEMFDPH-R 101
Cdd:cd15118     3 TICLHGIVSTLGIVENLLILWVV---GFRLR-RTVISIWIL--NLALSDLLATL---SLPFFTYylASGHTWELGTTFcR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 102 IVCSIFGACMVFFGlsplFLGSAMAVERCIGVTRPIF---HSTAIASHhmkRLLGLTWLLaALVAVFPLLLWRP-YEVQS 177
Cdd:cd15118    74 IHSSIFFLNMFVSG----FLLAAISLDRCLLVVKPVWaqnHRNVAAAK---KICGVIWAM-ALINTIPYFVFRDvIERKD 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 178 SRSWCFFHM----EEPKDWLDVLLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLV 253
Cdd:cd15118   146 GRKLCYYNFalfsPSPDNNHPICKQRQEGLAISKLLLAFLIPLVIIAVSYAVVSLIIRHRCRRRPGRFVRLVVSVVVSFA 225
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2067138855 254 scVCWGPLLIhVILLSTRVKNEPASFSLL-----MVVRMATWNQILDPWVYIL 301
Cdd:cd15118   226 --LCWAPYHI-FSIIEVMAHNQHSLRPLViqglpFATTLAFLNSVLNPVLYVF 275
7tmA_amine_R-like cd14967
amine receptors and similar proteins, member of the class A family of seven-transmembrane G ...
24-189 2.87e-08

amine receptors and similar proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; Amine receptors of the class A family of GPCRs include adrenoceptors, 5-HT (serotonin) receptors, muscarinic cholinergic receptors, dopamine receptors, histamine receptors, and trace amine receptors. The receptors of amine subfamily are major therapeutic targets for the treatment of neurological disorders and psychiatric diseases. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320098 [Multi-domain]  Cd Length: 259  Bit Score: 54.88  E-value: 2.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIIsMTVGILSNSLaLFILVKSYNRIRIKSKasflLFASSLVVTDLLghliNGSLVL---FVYSSHKKWEmfdPH 100
Cdd:cd14967     2 LAVFLSLI-ILVTVFGNLL-VILAVYRNRRLRTVTN----YFIVSLAVADLL----VALLVMpfsAVYTLLGYWP---FG 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 101 RIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRS 180
Cdd:cd14967    69 PVLCRFWIALDVLCCTASILNLCAISLDRYLAITRPLRYRQLMTKKRALIMIAAVWVYSLLISLPPLVGWRDETQPSVVD 148

                  ....*....
gi 2067138855 181 WCFFHMEEP 189
Cdd:cd14967   149 CECEFTPNK 157
7tmA_Melanopsin cd15336
vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G ...
34-181 2.14e-07

vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G protein-coupled receptors; Melanopsin (also called Opsin-4) is the G protein-coupled photopigment that mediates non-visual responses to light. In mammals, these photoresponses include the photo-entrainment of circadian rhythm, pupillary constriction, and acute nocturnal melatonin suppression. Mammalian melanopsins are expressed only in the inner retina, whereas non-mammalian vertebrate melanopsins are localized in various extra-retinal tissues such as iris, brain, pineal gland, and skin. Melanopsins belong the class A of the G protein-coupled receptors and possess seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320458 [Multi-domain]  Cd Length: 290  Bit Score: 52.41  E-value: 2.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  34 TVGILSNSLALFILVKSYnriRIKSKASFllFASSLVVTDLLGHLINgSLVLFVYSSHKKWEMFDphrIVCSIFGACMVF 113
Cdd:cd15336    12 ITGMLGNALVIYAFCRSK---KLRTPANY--FIINLAVSDFLMSLTQ-SPIFFVNSLHKRWIFGE---KGCELYAFCGAL 82
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2067138855 114 FGLSPLFLGSAMAVERCIGVTRPiFHSTAIASHhmKR---LLGLTWLLAALVAVFPLLLWRPY---EVQSSRSW 181
Cdd:cd15336    83 FGITSMITLLAISLDRYLVITKP-LASIRWVSK--KRamiIILLVWLYSLAWSLPPLFGWSAYvpeGLLTSCTW 153
7tmA_Opsin5_neuropsin cd15074
neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled ...
33-173 3.53e-06

neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled receptors; Neuropsin, also known as Opsin-5, is a photoreceptor protein expressed in the retina, brain, testes, and spinal cord. Neuropsin belongs to the type 2 opsin family of the class A G-protein coupled receptors. Mammalian neuropsin activates Gi protein-mediated photo-transduction pathway in a UV-dependent manner, whereas, in non-mammalian vertebrates, neuropsin is involved in regulating the photoperiodic control of seasonal reproduction in birds such as quail. As with other opsins, it may also act as a retinal photoisomerase.


Pssm-ID: 320202 [Multi-domain]  Cd Length: 284  Bit Score: 48.81  E-value: 3.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  33 MTVGILS---NSLALFILVKsyNRIRIKSKASFLLfasSLVVTDLlghlingSLVLFVYS-------SHKkWEMFDphrI 102
Cdd:cd15074     8 TVIGILStlgNGTVLFVLYR--RRSKLKPAELLTV---NLAVSDL-------GISVFGYPlaiisafAHR-WLFGD---I 71
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPiFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPY 173
Cdd:cd15074    72 GCVFYGFCGFLFGCCSINTLTAISIYRYLKICHP-PYGPKLSRRHVCIVIVAIWLYALFWAVAPLVGWGSY 141
7tmA_Anaphylatoxin_R-like cd14974
anaphylatoxin receptors and related G protein-coupled chemokine receptors, member of the class ...
24-309 4.56e-06

anaphylatoxin receptors and related G protein-coupled chemokine receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; This subfamily of G-protein coupled receptors includes anaphylatoxin receptors, formyl peptide receptors (FPR), prostaglandin D2 receptor 2, GPR1, and related chemokine receptors. The anaphylatoxin receptors are a group of G-protein coupled receptors that bind anaphylatoxins. The members of this group include C3a and C5a receptors. The formyl peptide receptors (FPRs) are chemoattractant GPCRs that involved in mediating immune responses to infection. They are expressed mainly on polymorphonuclear and mononuclear phagocytes and bind N-formyl-methionyl peptides (FMLP), which are derived from the mitochondrial proteins of ruptured host cells or invading pathogens. Chemokine receptor-like 1 (also known as chemerin receptor 23) is a GPCR for the chemoattractant adipokine chemerin, also known as retinoic acid receptor responder protein 2 (RARRES2), and for the omega-3 fatty acid derived molecule resolvin E1. Interaction with chemerin induces activation of the MAPK and PI3K signaling pathways leading to downstream functional effects, such as a decrease in immune responses, stimulation of adipogenesis, and angiogenesis. On the other hand, resolvin E1 negatively regulates the cytokine production in macrophages by reducing the activation of MAPK1/3 and NF-kB pathways. Prostaglandin D2 receptor, also known as CRTH2, is a chemoattractant G-protein coupled receptor expressed on T helper type 2 cells that binds prostaglandin D2 (PGD2). PGD2 functions as a mast cell-derived mediator to trigger asthmatic responses and also causes vasodilation. PGD2 exerts its inflammatory effects by binding to two G-protein coupled receptors, the D-type prostanoid receptor (DP) and PD2R2 (CRTH2). PD2R2 couples to the G protein G(i/o) type which leads to a reduction in intracellular cAMP levels and an increase in intracellular calcium. GPR1 is an orphan receptor that can be activated by the leukocyte chemoattractant chemerin, thereby suggesting that some of the anti-inflammatory actions of chemerin may be mediated through GPR1.


Pssm-ID: 320105 [Multi-domain]  Cd Length: 274  Bit Score: 48.45  E-value: 4.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISMTVGILSNSLALFILvksynRIRIKSKASFLLFASsLVVTDLLGHLIngSLVLFVYSSHKKWEMFDphRIV 103
Cdd:cd14974     2 VSLVLYALIFLLGLPGNGLVIWVA-----GFKMKRTVNTVWFLN-LALADFLFCLF--LPFLIVYIAMGHHWPFG--SVL 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 104 CSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIF---HSTAIASHhmkRLLGLTWLLAALVAVFPLLLWRPYEVQSSRS 180
Cdd:cd14974    72 CKLNSFVISLNMFASVFLLTAISLDRCLLVLHPVWaqnHRTVRLAS---VVCVGIWILALVLSVPYFVFRDTVTHHNGRS 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 181 WCFFHMEEPKD------WLDV-------LLPLLfsmlgllallLSIVCNTLTSCALLQARLRRKHHCRGTsyhiemicqL 247
Cdd:cd14974   149 CNLTCVEDYDLrrsrhkALTVirflcgfLLPLL----------IIAICYSVIAVKLRRKRLAKSSKPLRV---------L 209
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2067138855 248 LVIMLVSCVCWGPLLIHVILLST--RVKNEPASFSLLMVVRMATWNQILDPWVYILLRKAVLRK 309
Cdd:cd14974   210 LAVVVAFFLCWLPYHVFALLELVaaAGLPEVVLLGLPLATGLAYFNSCLNPILYVFMGQDFRKR 273
7tmA_Cannabinoid_R cd15099
cannabinoid receptors, member of the class A family of seven-transmembrane G protein-coupled ...
29-301 5.76e-06

cannabinoid receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; Cannabinoid receptors belong to the class A G-protein coupled receptor superfamily. Two types of cannabinoid receptors, CB1 and CB2, have been identified so far. They are activated by naturally occurring endocannabinoids, cannabis plant-derived cannabinoids such as tetrahydrocannabinol, or synthetic cannabinoids. The CB receptors are involved in the various physiological processes such as appetite, mood, memory, and pain sensation. CB1 receptor is expressed predominantly in central and peripheral neurons, while CB2 receptor is found mainly in the immune system.


Pssm-ID: 320227 [Multi-domain]  Cd Length: 281  Bit Score: 47.91  E-value: 5.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  29 SIISMTVGILSNSLALFILVKSYNRIRIKSKASFLlFASSLVVTDLLGHlingslVLFVYSS---HKKWEMFDPHRIVCS 105
Cdd:cd15099     4 AVLCFLAGPVTFLENILVLLTILSSTALRRRPSYL-FIGSLALADMLAS------VIFTISFldfHVFHQRDSRNLFLFK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 106 IFGACMVFFG-LSPLFLgsaMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFF 184
Cdd:cd15099    77 LGGVTMAFTAsVGSLLL---TALDRYLCIYQPSNYKLLVTRTRAKVAILLMWCVTIIISFLPLMGWRCKTWDSPCSRLFP 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 185 HMEEP--KDWLDVLLPLLFSMLGLLALllsIVCNTLTSCALLQARLRRKHHCRGTS---YHIEMICQLLVIMLVSCVCWG 259
Cdd:cd15099   154 YIDRHylASWTGLQLVLLFLIIYAYPY---ILWKAHRHEANMGGPKLGRQQVKGQArmrMDIRLAKTLSLILLVLAICWL 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2067138855 260 PLLIH-----VILLSTRVKNEPASFSLLMVVrmatwNQILDPWVYIL 301
Cdd:cd15099   231 PVLAFmlvdvRVTLTNKQKRMFAFCSMLCLV-----NSCVNPIIYAL 272
7tmA_CB1 cd15340
cannabinoid receptor subtype 1, member of the class A family of seven-transmembrane G ...
29-311 8.85e-06

cannabinoid receptor subtype 1, member of the class A family of seven-transmembrane G protein-coupled receptors; Cannabinoid receptors belong to the class A G-protein coupled receptor superfamily. Two types of cannabinoid receptors, CB1 and CB2, have been identified so far. They are activated by naturally occurring endocannabinoids, cannabis plant-derived cannabinoids such as tetrahydrocannabinol, or synthetic cannabinoids. The CB receptors are involved in the various physiological processes such as appetite, mood, memory, and pain sensation. CB1 receptor is expressed predominantly in central and peripheral neurons, while CB2 receptor is found mainly in the immune system.


Pssm-ID: 320462 [Multi-domain]  Cd Length: 292  Bit Score: 47.60  E-value: 8.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  29 SIISMTVG---ILSNSLALFILVKSYNrirIKSKASFLlFASSLVVTDLLGHLIngslvlFVYSS------HKKwemfDP 99
Cdd:cd15340     4 AVLSLTLGtftVLENLLVLCVILHSRS---LRCRPSYH-FIGSLAVADLLGSVI------FVYSFldfhvfHRK----DS 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 100 HRIVCSIFGACMVFFGLS--PLFLgsaMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQS 177
Cdd:cd15340    70 PNVFLFKLGGVTASFTASvgSLFL---TAIDRYISIHRPLAYKRIVTRTKAVIAFCVMWTIAIVIAVLPLLGWNCKKLNS 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 178 SRSWCFFHMEEP--KDWLDVLLPLLFSMLGLLALllsIVCNTLTSCALLQARLRRK----HHCRGTSYH----------I 241
Cdd:cd15340   147 VCSDIFPLIDETylMFWIGVTSVLLLFIVYAYMY---ILWKAHHHAVRMLQRGTQKsiivYTSEDGKVQttrpdqtrmdI 223
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2067138855 242 EMICQLLVIMLVSCVCWGPLL-IHVILLSTRV-KNEPASFSLLMVvrMATWNQILDPWVYIlLRKAVLRKMF 311
Cdd:cd15340   224 RLAKTLVLILVVLIICWGPLLaIMVYDVFGKMnKLIKTVFAFCSM--LCLLNSTVNPIIYA-LRSKDLRHAF 292
7tmA_Chemokine_R cd14984
classical and atypical chemokine receptors, member of the class A family of ...
35-270 1.50e-05

classical and atypical chemokine receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; Chemokines are principal regulators for leukocyte trafficking, recruitment, and activation. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling. Currently, there are ten known receptors for CC chemokines, seven for CXC chemokines, and single receptors for the XC and CX3C chemokines. In addition to these classical chemokine receptors, there exists a subfamily of atypical chemokine receptors (ACKRs) that are unable to couple to G-proteins and, instead, they preferentially mediate beta-arrestin dependent processes, such as receptor internalization, after ligand binding. The classical chemokine receptors contain a conserved DRYLAIV motif in the second intracellular loop, which is required for G-protein coupling. However, the ACKRs lack this conserved motif and fail to couple to G-proteins and induce classical GPCR signaling. Five receptors have been identified for the ACKR family, including CC-chemokine receptors like 1 and 2 (CCRL1 and CCRL2), CXCR7, Duffy antigen receptor for chemokine (DARC), and D6. Both ACKR1 (DARC) and ACKR3 (CXCR7) show low sequence homology to the classic chemokine receptors.


Pssm-ID: 341319 [Multi-domain]  Cd Length: 278  Bit Score: 46.82  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILVKsynRIRIKSKASFLLFasSLVVTDLLGHLingSLVLFVYSSHKKWEMfdpHRIVCSIFGAC--MV 112
Cdd:cd14984    13 LGLVGNSLVLLVLLY---YRKLRSMTDVYLL--NLALADLLFVL---TLPFWAVYAADGWVF---GSFLCKLVSALytIN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 113 FFglSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLWRPYEVQSSRSWC--FFHMEEPK 190
Cdd:cd14984    82 FY--SGILFLACISIDRYLAIVHAVSALRARTLLHGKLTCLGVWALALLLSL-PEFIFSQVSEENGSSICsyDYPEDTAT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 191 DW----------LDVLLPLLFsMlgllalllsIVCNTLTSCALLQARLRRKHHCrgtsyhIEMIcqlLVIMLVSCVCWGP 260
Cdd:cd14984   159 TWktllrllqniLGFLLPLLV-M---------LFCYSRIIRTLLRARNHKKHRA------LRVI---FAVVVVFFLCWLP 219
                         250
                  ....*....|
gi 2067138855 261 LLIhVILLST 270
Cdd:cd14984   220 YNI-VLLLDT 228
7tmA_S1PR4_Edg6 cd15349
sphingosine-1-phosphate receptor subtype 4 (S1PR4 or S1P4), also called endothelial ...
126-306 1.74e-05

sphingosine-1-phosphate receptor subtype 4 (S1PR4 or S1P4), also called endothelial differentiation gene 6 (Edg6), member of the class A family of seven-transmembrane G protein-coupled receptors; The endothelial differentiation gene (Edg) family of G-protein coupled receptors binds blood borne lysophospholipids including sphingosine-1-phosphate (S1P) and lysophosphatidic acid (LPA), which are involved in the regulation of cell proliferation, survival, migration, invasion, endothelial cell shape change and cytoskeletal remodeling. The Edg receptors are classified into two subfamilies: the lysophosphatidic acid subfamily that includes LPA1 (Edg2), LPA2 (Edg4), and LPA3 (Edg7); and the S1P subfamily that includes S1P1 (Edg1), S1P2 (Edg5), S1P3 (Edg3), S1P4 (Edg6), and S1P5 (Edg8). The Edg receptors couple and activate at least three different G protein subtypes including G(i/o), G(q/11), and G(12/13).


Pssm-ID: 320471 [Multi-domain]  Cd Length: 271  Bit Score: 46.32  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 126 AVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRpyevqssrswCFFHMEEpkdwLDVLLPL------ 199
Cdd:cd15349    94 AVERYATMVRPVAENTATKTYRVYGMIVLCWILAFLIGFLPLLGWN----------CLCDFRS----CSSLLPLysksyi 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 200 LFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLLihvILLSTRVKNEPASF 279
Cdd:cd15349   160 LFCLVIFFIILLTIIGLYFAIYCLVRASGQRVISARSRRRSLRLLKTVLMILGAFMVCWGPLF---ILLLVDFFCSSRSC 236
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2067138855 280 SLLM----VVRMATWNQILDPWVYIL----LRKAV 306
Cdd:cd15349   237 KPLFgmewVLALAVLNSAINPLIYSFrsleVRRAV 271
7tmA_S1PR cd15102
sphingosine-1-phosphate receptors, member of the class A family of seven-transmembrane G ...
124-308 3.48e-05

sphingosine-1-phosphate receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; The endothelial differentiation gene (Edg) family of G-protein coupled receptors binds blood borne lysophospholipids including sphingosine-1-phosphate (S1P) and lysophosphatidic acid (LPA), which are involved in the regulation of cell proliferation, survival, migration, invasion, endothelial cell shape change and cytoskeletal remodeling. The Edg receptors are classified into two subfamilies: the lysophosphatidic acid subfamily that includes LPA1 (Edg2), LPA2 (Edg4), and LPA3 (Edg7); and the S1P subfamily that includes S1P1 (Edg1), S1P2 (Edg5), S1P3 (Edg3), S1P4 (Edg6), and S1P5 (Edg8). The Edg receptors couple and activate at least three different G protein subtypes including G(i/o), G(q/11), and G(12/13).


Pssm-ID: 320230 [Multi-domain]  Cd Length: 270  Bit Score: 45.54  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 124 AMAVERCIGVTRPIFHStAIASHHMKRLLGLTWLLAALVAVFPLLLWRpyevqssrswCFFHMEEpkdwLDVLLPL---- 199
Cdd:cd15102    92 AIAIERHLTMAKMKPYG-ASKTSRVLLLIGACWLISLLLGGLPILGWN----------CLGALDA----CSTVLPLyskh 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 200 --LFSMLGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLVSCVCWGPLLIHVIL-LSTRVKNEP 276
Cdd:cd15102   157 yvLFCVTIFAGILAAIVALYARIYCLVRASGRKATRASASPRSLALLKTVLIVLLVFIACWGPLFILLLLdVACPVKTCP 236
                         170       180       190
                  ....*....|....*....|....*....|..
gi 2067138855 277 ASFSLLMVVRMATWNQILDPWVYILLRKAVLR 308
Cdd:cd15102   237 ILYKADWFLALAVLNSALNPIIYTLRSRELRR 268
7tmA_5-HT1A_vertebrates cd15330
serotonin receptor subtype 1A from vertebrates, member of the class A family of ...
56-182 4.10e-05

serotonin receptor subtype 1A from vertebrates, member of the class A family of seven-transmembrane G protein-coupled receptors; The 5-HT1 receptors, one of 14 mammalian 5-HT receptors, is a member of the class A of GPCRs and is activated by the endogenous neurotransmitter and peripheral signal mediator serotonin (5-hydroxytryptamine, 5-HT). The 5-HT1 receptors mediate inhibitory neurotransmission by coupling to G proteins of the G(i/o) family, which lead to a decrease in adenylate cyclase activity, thereby decreasing intracellular cAMP levels and calcium influx. The 5-HT1 receptor subfamily includes 5 subtypes: 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, and 5-HT1F. There is no 5-HT1C receptor subtype, as it has been reclassified as the 5-HT2C receptor. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.


Pssm-ID: 320453 [Multi-domain]  Cd Length: 260  Bit Score: 45.35  E-value: 4.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  56 IKSKASFLLfaSSLVVTDLLGHLingsLVL---FVYSSHKKWEMfdpHRIVCSIFGACMVFFGLSPLFLGSAMAVERCIG 132
Cdd:cd15330    31 LQNVANYLI--GSLAVTDLMVSV----LVLpmaALYQVLNKWTL---GQVTCDLFIALDVLCCTSSILHLCAIALDRYWA 101
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2067138855 133 VTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd15330   102 ITDPIDYVNKRTPRRAAVLISLTWLIGFSISIPPMLGWRTPEDRSDPDAC 151
7tmA_5-HT1_5_7 cd15064
serotonin receptor subtypes 1, 5 and 7, member of the class A family of seven-transmembrane G ...
24-171 5.04e-05

serotonin receptor subtypes 1, 5 and 7, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes serotonin receptor subtypes 1, 5, and 7 that are activated by the neurotransmitter serotonin. The 5-HT1 and 5-HT5 receptors mediate inhibitory neurotransmission by coupling to G proteins of the G(i/o) family. The 5-HT1 receptor subfamily includes 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, and 5-HT1F. There is no 5-HT1C receptor subtype, as it has been reclassified as 5-HT2C receptor. The 5-HT5A and 5-HT5B receptors have been cloned from rat and mouse, but only the 5-HT5A isoform has been identified in human because of the presence of premature stop codons in the human 5-HT5B gene, which prevents a functional receptor from being expressed. The 5-HT7 receptor is coupled to Gs, which positively stimulates adenylate cyclase activity, leading to increased intracellular cAMP formation and calcium influx. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.


Pssm-ID: 320192 [Multi-domain]  Cd Length: 258  Bit Score: 45.01  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIIsMTVGILSNSLAL--FILVKSYNRIrikskASFLLfaSSLVVTDLLGHLINGSLVLfVYSSHKKWEMfdpHR 101
Cdd:cd15064     3 ISVLLSLI-ILATILGNALVIaaILLTRKLHTP-----ANYLI--ASLAVADLLVAVLVMPLSA-VYELTGRWIL---GQ 70
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 102 IVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWR 171
Cdd:cd15064    71 VLCDIWISLDVTCCTASILHLCVIALDRYWAITDAVEYAHKRTPKRAAVMIALVWTLSICISLPPLFGWR 140
7tmA_5-HT7 cd15329
serotonin receptor subtype 7, member of the class A family of seven-transmembrane G ...
26-170 8.13e-05

serotonin receptor subtype 7, member of the class A family of seven-transmembrane G protein-coupled receptors; The 5-HT7 receptor, one of 14 mammalian serotonin receptors, is a member of the class A of GPCRs and is activated by the neurotransmitter serotonin (5-hydroxytryptamine, 5-HT). 5-HT7 receptor mainly couples to Gs protein, which positively stimulates adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. 5-HT7 receptor is expressed in various human tissues, mainly in the brain, the lower gastrointestinal tract and in vital blood vessels including the coronary artery. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.


Pssm-ID: 320452 [Multi-domain]  Cd Length: 260  Bit Score: 44.18  E-value: 8.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  26 VTASIISMTVG-ILSNSLALF--ILVKsynriRIKSKASFLLFasSLVVTDLLGHLINGSLVLfVYSSHKKWeMFDPhrI 102
Cdd:cd15329     3 IGIVLLIIILGtVVGNALVIIavCLVK-----KLRTPSNYLIV--SLAVSDLLVALLVMPLAI-IYELSGYW-PFGE--I 71
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2067138855 103 VCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLW 170
Cdd:cd15329    72 LCDVWISFDVLLCTASILNLCAISVDRYLVITRPLTYAVKRTPKRMALMIAIVWLLSALISIPPLFGW 139
7tmA_NTSR-like cd14979
neurotensin receptors and related G protein-coupled receptors, member of the class A family of ...
35-170 1.32e-04

neurotensin receptors and related G protein-coupled receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; This subfamily includes the neurotensin receptors and related G-protein coupled receptors, including neuromedin U receptors, growth hormone secretagogue receptor, motilin receptor, the putative GPR39 and the capa receptors from insects. These receptors all bind peptide hormones with diverse physiological effects. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320110 [Multi-domain]  Cd Length: 300  Bit Score: 43.88  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILVKSYNrirIKSKASFLLFasSLVVTDLLGHLINGSLVLFVYSSHKKWEMFDPhriVCSIFGACMVFF 114
Cdd:cd14979    13 VGIVGNLLTCIVIARHKS---LRTTTNYYLF--SLAVSDLLILLVGLPVELYNFWWQYPWAFGDG---GCKLYYFLFEAC 84
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2067138855 115 GLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLW 170
Cdd:cd14979    85 TYATVLTIVALSVERYVAICHPLKAKTLVTKRRVKRFILAIWLVSILCAI-PILFL 139
7tmA_CysLTR1 cd15158
cysteinyl leukotriene receptor 1, member of the class A family of seven-transmembrane G ...
25-299 1.51e-04

cysteinyl leukotriene receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors; Cysteinyl leukotrienes (LTC4, LTD4, and LTE4) are the most potent inflammatory lipid mediators that play an important role in human asthma. They are synthesized in the leucocytes (cells of immune system) from arachidonic acid by the actions of 5-lipoxygenase and induce bronchial constriction through G protein-coupled receptors, CysLTR1 and CysLTR2. Activation of CysLTR1 by LTD4 induces airway smooth muscle contraction and proliferation, eosinophil migration, and damage to the lung tissue. They belong to the class A GPCR superfamily, which all have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320286 [Multi-domain]  Cd Length: 285  Bit Score: 43.58  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  25 SVTASIISMtVGILSNSLALFILVKSYnririKSKASFLLFASSLVVTDLLGHLingSLVL-FVYSSHK-KWEMFDphrI 102
Cdd:cd15158     4 STLYSVITV-FGLVGNGFALYVLIKTY-----RQKSAFHIYMLNLAVSDLLCVC---TLPLrVVYYVHKgQWLFGD---F 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 103 VCSIFG-ACMVFFGLSPLFLgSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLWRPYEVQSSRSW 181
Cdd:cd15158    72 LCRISSyALYVNLYCSIYFM-TAMSFTRFLAIVFPVQNLNLVTVKKARIVCVGIWIFVTLTSS-PFLMSGSHDTETNKTK 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 182 CFfhmEEPKD--WLDVLLPL-LFSMLGLLALLLSI--VCNTLTSCALLQARLRRKHHCRGTSYHIEMIcqlLVIMLVSCV 256
Cdd:cd15158   150 CF---EPPQSnqQLTKLLVLnYISLVVGFIIPFLVilICYAMIIRTLLKNTMKARKQQSSRKKAIRMI---IIVLLAFLV 223
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2067138855 257 CWGPL----LIHVILLSTrvKNEPASFSLLM---VV---RMATWNQILDPWVY 299
Cdd:cd15158   224 SFMPYhiqrTIHLHFLSR--KDSTCEEVLYMqksVVitlCLAAANCCFDPLLY 274
7tmA_D2-like_dopamine_R cd15053
D2-like dopamine receptors, member of the class A family of seven-transmembrane G ...
65-175 1.60e-04

D2-like dopamine receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; Dopamine receptors are members of the class A G protein-coupled receptors that are involved in many neurological processes in the central nervous system (CNS). The neurotransmitter dopamine is the primary endogenous agonist for dopamine receptors. Dopamine receptors consist of at least five subtypes: D1, D2, D3, D4, and D5. The D1 and D5 subtypes are members of the D1-like family of dopamine receptors, whereas the D2, D3 and D4 subtypes are members of the D2-like family. The D1-like family receptors are coupled to G proteins of the G(s) family, which activate adenylate cyclase, causing cAMP formation and activation of protein kinase A. In contrast, activation of D2-like family receptors is linked to G proteins of the G(i) family, which inhibit adenylate cyclase. Dopamine receptors are major therapeutic targets for neurological and psychiatric disorders such as drug abuse, depression, schizophrenia, or Parkinson's disease.


Pssm-ID: 320181 [Multi-domain]  Cd Length: 263  Bit Score: 43.49  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  65 FASSLVVTDLLGHLINGSLVLFVYSSHKKWEMfdpHRIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIA 144
Cdd:cd15053    38 FIVSLAVADLLVAILVMPFAVYVEVNGGKWYL---GPILCDIYIAMDVMCSTASIFNLCAISIDRYIAVTQPIKYARQKN 114
                          90       100       110
                  ....*....|....*....|....*....|....
gi 2067138855 145 SHHMKRLLGLTWLLAALVAVfPLLL---WRPYEV 175
Cdd:cd15053   115 SKRVLLTIAIVWVVSAAIAC-PLLFglnNVPYRD 147
7tmA_LTB4R cd14975
leukotriene B4 receptors, member of the class A family of seven-transmembrane G ...
31-260 2.54e-04

leukotriene B4 receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; Leukotriene B4 (LTB4), a metabolite of arachidonic acid, is a powerful chemotactic activator for granulocytes and macrophages. Two receptors for LTB4 have been identified: a high-affinity receptor (LTB4R1 or BLT1) and a low-affinity receptor (TB4R2 or BLT2). Both BLT1 and BLT2 receptors belong to the rhodopsin-like G-protein coupled receptor superfamily and primarily couple to G(i) proteins, which lead to chemotaxis, calcium mobilization, and inhibition of adenylate cyclase. In some cells, they can also couple to the G(q)-like protein, G16, and activate phospholipase C. LTB4 is involved in mediating inflammatory processes, immune responses, and host defense against infection. Studies have shown that LTB4 stimulates leukocyte extravasation, neutrophil degranulation, lysozyme release, and reactive oxygen species generation.


Pssm-ID: 320106 [Multi-domain]  Cd Length: 278  Bit Score: 42.85  E-value: 2.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  31 ISMTVGILSNSLALFILVKsynriRIKSKASFLLFASSLVVTDLLGHLingSLVLFVYS-SHKKWeMFDPH--RIVCSIF 107
Cdd:cd14975     9 LAFAIGLPGNSFVIWSILI-----KVKQRSVTMLLVLNLALADLAVLL---TLPVWIYFlATGTW-DFGLAacKGCVYVC 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 108 GACMvffgLSPLFLGSAMAVERCIGVTRPiFHSTAIASHHM-KRLLGLTWLLAALVAVfPLLLWRPYEVQSSRSWCFFHm 186
Cdd:cd14975    80 AVSM----YASVFLITLMSLERFLAVSRP-FVSQGWRAKALaHKVLAIIWLLAVLLAT-PVIAFRHVEETVENGMCKYR- 152
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2067138855 187 eEPKDWLDVLLPLLFSMLGLLALLLSIVcntlTSCALLQARLRRKHHCRGtsyhiEMICQLLVIMLVS-CVCWGP 260
Cdd:cd14975   153 -HYSDGQLVFHLLLETVVGFAVPFTAVV----LCYSCLLRRLRRRRFRRR-----RRTGRLIASVVVAfAACWLP 217
7tmA_NKR_NK3R cd16003
neuromedin-K receptor, member of the class A family of seven-transmembrane G protein-coupled ...
33-267 3.80e-04

neuromedin-K receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The neuromedin-K receptor (NKR), also known as tachykinin receptor 3 (TACR3) or neurokinin B receptor or NK3R, is a G-protein coupled receptor that specifically binds to neurokinin B. The tachykinins (TKs) act as excitatory transmitters on neurons and cells in the gastrointestinal tract. The TKs are characterized by a common five-amino acid C-terminal sequence, Phe-X-Gly-Leu-Met-NH2, where X is a hydrophobic residue. The three major mammalian tachykinins are substance P (SP), neurokinin A (NKA), and neurokinin B (NKB). The physiological actions of tachykinins are mediated through three types of receptors: neurokinin receptor type 1 (NK1R), NK2R, and NK3R. NK3R is activated by its high-affinity ligand, NKB, which is primarily involved in the central nervous system and plays a critical role in the regulation of gonadotropin hormone release and the onset of puberty.


Pssm-ID: 320669 [Multi-domain]  Cd Length: 282  Bit Score: 42.61  E-value: 3.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  33 MTVGILSNSLALFILVkSYNRIRIKSKasflLFASSLVVTDLLGHLINgSLVLFVYSSHKKWEMFDPHRIVCSIFGACMV 112
Cdd:cd16003    11 VAVAVFGNLIVIWIIL-AHKRMRTVTN----YFLVNLAFSDASMAAFN-TLINFIYALHSEWYFGEAYCRFHNFFPITSV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 113 FfglSPLFLGSAMAVERCIGVTRPIfhSTAIASHHMKRLLGLTWLLAALVAvFPLLLWRPYEVQSSRSWCFFHM-EEPKD 191
Cdd:cd16003    85 F---ASIYSMTAIAVDRYMAIIDPL--KPRLSATATKVVIGSIWILAFLLA-FPQCLYSKTKVMPGRTLCFVAWpGGPDQ 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 192 ---------WLDVLLPLLFsmlglLALLLSIVCNTL-------TSCALLQARLRRKHhcrgtsyhiEMICQLLVIMLVSC 255
Cdd:cd16003   159 hftyhiiviVLVYCLPLLV-----MGITYTIVGITLwggeipgDTSDKYHEQLRAKR---------KVVKMMIIVVLTFA 224
                         250
                  ....*....|..
gi 2067138855 256 VCWGPLLIHVIL 267
Cdd:cd16003   225 ICWLPYHIYFIV 236
7tmA_Parapinopsin cd15075
non-visual parapinopsin, member of the class A family of seven-transmembrane G protein-coupled ...
101-306 3.81e-04

non-visual parapinopsin, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes the non-visual pineal pigment, parapinopsin, which is a member of the class A of the seven transmembrane G protein-coupled receptors. Parapinopsin serves as a UV-sensitive pigment for the wavelength discrimination in the pineal-related organs of lower vertebrates such as reptiles, amphibians, and fish. Although parapinopsin is phylogenetically related to vertebrate visual pigments such as rhodopsin, which releases its retinal chromophore and bleaches, the parapinopsin photoproduct is stable and does not bleach. The vertebrate non-visual opsin family includes pinopsins, parapinopsin, VA (vertebrate ancient) opsins, and parietopsins. These non-visual opsins are expressed in various extra-retinal tissues and/or in non-rod, non-cone retinal cells.


Pssm-ID: 320203 [Multi-domain]  Cd Length: 279  Bit Score: 42.46  E-value: 3.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 101 RIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLgLTWLLAALVAVFPLLLWRPYEVQSSRS 180
Cdd:cd15075    70 RVGCVLEGFAVAFFGIAALCTVAVIAVDRLFVVCKPLGTLTFQTRHALAGIA-SSWLWSLIWNTPPLFGWGSYQLEGVMT 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 181 WCFFHMEEpKDWLDVLLPLLFSMLGLLALLLSIVCN------TLTSCALLQARLrrkhhcRGTSYHIEMICQLLVIMLVS 254
Cdd:cd15075   149 SCAPDWYS-RDPVNVSYILCYFSFCFAIPFAIILVSygyllwTLRQVAKLGVAE------GGSTAKAEVQVARMVVVMVM 221
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2067138855 255 C--VCWGP--LLIHVILLSTRVKNEPASFSLLMVvrMATWNQILDPWVYILLRKAV 306
Cdd:cd15075   222 AflLCWLPyaAFALTVVSKPDVYINPLIATVPMY--LAKSSTVYNPIIYIFMNKQF 275
7tmA_Vasopressin_Oxytocin cd15196
vasopressin and oxytocin receptors, member of the class A family of seven-transmembrane G ...
23-309 4.92e-04

vasopressin and oxytocin receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; Vasopressin (also known as arginine vasopressin or anti-diuretic hormone) and oxytocin are synthesized in the hypothalamus and are released from the posterior pituitary gland. The actions of vasopressin are mediated by the interaction of this hormone with three receptor subtypes: V1aR, V1bR, and V2R. These subtypes are differ in localization, function, and signaling pathways. Activation of V1aR and V1bR stimulate phospholipase C, while activation of V2R stimulates adenylate cyclase. Although vasopressin and oxytocin differ only by two amino acids and stimulate the same cAMP/PKA pathway, they have divergent physiological functions. Vasopressin is involved in regulating blood pressure and the balance of water and sodium ions, whereas oxytocin plays an important role in the uterus during childbirth and in lactation.


Pssm-ID: 320324 [Multi-domain]  Cd Length: 264  Bit Score: 41.84  E-value: 4.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  23 ELSVTASIISMTVgiLSNSLALFILvksYNRIRIKSKASFLLFasSLVVTDLLGHLIN--GSLVlfvysshkkWEM---F 97
Cdd:cd15196     3 EIAVLATILVLAL--FGNSCVLLVL---YRRRRKLSRMHLFIL--HLSVADLLVALFNvlPQLI---------WDItyrF 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  98 DPHRIVCSIfgacMVFFGLSPLFLGS----AMAVERCIGVTRPIFHSTAIaSHHMKRLLGLTWLLAALVAVFPLLLWRPY 173
Cdd:cd15196    67 YGGDLLCRL----VKYLQVVGMYASSyvlvATAIDRYIAICHPLSSHRWT-SRRVHLMVAIAWVLSLLLSIPQLFIFSYQ 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 174 EVQSSRSWCFFHMEEPKD------WLDV---LLPLLFSmlgllalllsIVCNTLTSCALLQARLRrkhhcrgtsyhieMI 244
Cdd:cd15196   142 EVGSGVYDCWATFEPPWGlrayitWFTVavfVVPLIIL----------AFCYGRICYVVWRAKIK-------------TV 198
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2067138855 245 CQLLVIMLVSCVCWGPLLIhVILLSTRVKNEP---ASFSLLMVvrMATWNQILDPWVYILLRKAVLRK 309
Cdd:cd15196   199 KLTLVVVACYIVCWTPFFV-VQMWAAWDPTAPiegPAFVIIML--LASLNSCTNPWIYLAFSGNLRRA 263
7tmA_CXCR1_2 cd15178
CXC chemokine receptor types 1 and 2, member of the class A family of seven-transmembrane G ...
37-275 5.36e-04

CXC chemokine receptor types 1 and 2, member of the class A family of seven-transmembrane G protein-coupled receptors; CXCR1 and CXCR2 are closely related chemotactic receptors for a group of CXC chemokines distinguished by the presence of the amino acid motif ELR immediately adjacent to their CXC motif. Expression of CXCR1 and CXCR2 is strictly controlled in neutrophils by external stimuli such as lipopolysaccharide (LPS), tumor necrosis factor (TNF)-alpha, Toll-like receptor agonists, and nitric oxide. CXCL8 (formerly known as interleukin-8) binds with high-affinity and activates both receptors. CXCR1 also binds CXCL7 (neutrophil-activating protein-2), whereas CXCR2 non-selectively binds to all seven ELR-positive chemokines (CXCL1-7). Chemokines are principal regulators for leukocyte trafficking, recruitment, and activation. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling. Currently, there are ten known receptors for CC chemokines, seven for CXC chemokines, and single receptors for the XC and CX3C chemokines.


Pssm-ID: 341333 [Multi-domain]  Cd Length: 279  Bit Score: 41.88  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  37 ILSNSLAlfILVKSYNRIRIKSKASFLLfasSLVVTDLLGHLingSLVLFVYSSHKKWemfdphrivcsIFGACM----- 111
Cdd:cd15178    15 LPGNSLV--VLVILYNRRSRSSTDVYLL---HLAIADLLFAL---TLPFWAVSVVKGW-----------IFGTFMcklvs 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 112 ----VFFGLSPLFLGsamaverCIGVTR--PIFHSTAIASHhmKRLL-----GLTWLLAALVAVfPLLLWRP--YEVQSS 178
Cdd:cd15178    76 llqeANFYSGILLLA-------CISVDRylAIVHATRALTQ--KRHLvkfvcAGVWLLSLLLSL-PALLNRDafKPPNSG 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 179 RSWCFFHM--EEPKDW----------LDVLLPLLFsMlgllalllsIVCNTLTSCALLQARLRRKHHCrgtsyhIEMIcq 246
Cdd:cd15178   146 RTVCYENLgnESADKWrvvlrilrhtLGFLLPLVV-M---------LFCYGFTIKTLLQTRSFQKHRA------MRVI-- 207
                         250       260       270
                  ....*....|....*....|....*....|..
gi 2067138855 247 lLVIMLVSCVCWGPLLIHVI---LLSTRVKNE 275
Cdd:cd15178   208 -FAVVLAFLLCWLPYNVTVLidtLMRTKLITE 238
7tmA_Kappa_opioid_R cd15091
opioid receptor subtype kappa, member of the class A family of seven-transmembrane G ...
35-302 6.05e-04

opioid receptor subtype kappa, member of the class A family of seven-transmembrane G protein-coupled receptors; The kappa-opioid receptor binds the opioid peptide dynorphin as the primary endogenous ligand. The opioid receptor family is composed of four major subtypes: mu (MOP), delta (DOP), kappa (KOP) opioid receptors, and the nociceptin/orphanin FQ peptide receptor (NOP). They are distributed widely in the central nervous system and respond to classic alkaloid opiates, such as morphine and heroin, as well as to endogenous peptide ligands, which include dynorphins, enkephalins, endorphins, endomorphins, and nociceptin. Opioid receptors are coupled to inhibitory G proteins of the G(i/o) family and involved in regulating a variety of physiological functions such as pain, addiction, mood, stress, epileptic seizure, and obesity, among many others.


Pssm-ID: 320219 [Multi-domain]  Cd Length: 282  Bit Score: 41.86  E-value: 6.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILVKsYNRIRIKSKASF--LLFASSLVVTDL----LGHLINgslvlfvysshkKWEMFDphrIVCSIFG 108
Cdd:cd15091    13 VGLVGNSLVMFVIIR-YTKMKTATNIYIfnLALADALVTTTMpfqsTVYLMN------------SWPFGD---VLCKIVI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 109 ACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLW-RPYEVQSSRSWCFFHME 187
Cdd:cd15091    77 SIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGgTKVREDVDSTECSLQFP 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 188 EPK-DWLDVLLPL-LFSMLGLLALLLSIVCNTLTSCALLQARLRRKHhcRGTSYHIEMICQL-LVIMLVSCVCWGPLliH 264
Cdd:cd15091   157 DDDySWWDTFMKIcVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGS--REKDRNLRRITRLvLVVVAVFVVCWTPI--H 232
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2067138855 265 VILLSTRVKNEPASFSLL----MVVRMATWNQILDPWVYILL 302
Cdd:cd15091   233 IFILVEALGSVSHSTAAVssyyFCIALGYTNSSLNPILYAFL 274
7tmA_ET_R-like cd14977
endothelin receptors and related proteins, member of the class A family of seven-transmembrane ...
29-283 7.27e-04

endothelin receptors and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This subfamily of G-protein coupled receptors includes endothelin receptors, bombesin receptor subtype 3 (BRS-3), gastrin-releasing peptide receptor (GRPR), neuromedin B receptor (NMB-R), endothelin B receptor-like 2 (ETBR-LP-2), and GRP37. The endothelin receptors and related proteins are members of the seven transmembrane rhodopsin-like G-protein coupled receptor family (class A GPCRs) which activate multiple effectors via different types of G protein.


Pssm-ID: 320108 [Multi-domain]  Cd Length: 292  Bit Score: 41.64  E-value: 7.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  29 SIISMTVGILSNSLALFILVKSYNrirIKSKASFLLfaSSLVVTDLLGHLINGSLVLFVYSShKKWemfdphrivcsIFG 108
Cdd:cd14977     7 SLVIFAVGIIGNLMVLCIVCTNYY---MRSVPNILI--ASLALGDLLLLLLCVPLNAYNLLT-KDW-----------LFG 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 109 ACMV----FFGLSPL----FLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAV----FPLLLWRPYEVQ 176
Cdd:cd14977    70 DVMCklvpFIQVTSLgvtvFSLCALSIDRYRAAVNSMPMQTIGACLSTCVKLAVIWVGSVLLAVpeavLSTVARESSLDN 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 177 SSRSWCFFHMEEP--------KDWLDV----LLPLLFSmlgllalllsIVCNTLTSCALlqarLRRKHHC-RGTSYHIE- 242
Cdd:cd14977   150 SSLTVCIMKPSTPfaetypkaRSWWLFgcyfCLPLAFT----------AVCYLLMARTL----IRAAKEYtRGTKKHMKq 215
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2067138855 243 ---MICQLLVIMLVSCVCWGPLLIHVIL---LSTRVKNEPASFSLLM 283
Cdd:cd14977   216 rrqLAKTVLCLVLVFAFCWLPEHISNILratLYNEVLIDTRSTLDIL 262
7tmA_Parietopsin cd15085
non-visual parietopsins, member of the class A family of seven-transmembrane G protein-coupled ...
31-304 7.29e-04

non-visual parietopsins, member of the class A family of seven-transmembrane G protein-coupled receptors; Parietopsin is a non-visual green light-sensitive opsin that was initially identified in the parietal eye of lizards. The vertebrate non-visual opsin family includes pinopsins, parapinopsin, VA (vertebrate ancient) opsins, and parietopsins. These non-visual opsins are expressed in various extra-retinal tissues and/or in non-rod, non-cone retinal cells. They are thought to be involved in light-dependent physiological functions such as photo-entrainment of circadian rhythm, photoperiodicity and body color change. Parietopsin belongs to the class A of the G protein-coupled receptors and shows strong homology to the vertebrate visual opsins.


Pssm-ID: 320213 [Multi-domain]  Cd Length: 280  Bit Score: 41.38  E-value: 7.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  31 ISMTVGILSNSLALFILVKSynrirIKSKASFLLFASSLVVTDLLGHLInGSLVLFVYSSHKKwemFDPHRIVCSIFGAC 110
Cdd:cd15085     9 LNATFSIFNNVLVIAVTLKN-----PQLRNPINIFILNLSFSDLMMALC-GTTIVTVTNYEGY---FYLGDAFCIFQGFA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 111 MVFFGLSPLFLGSAMAVERCIGVTRPIfHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFFHMEEpK 190
Cdd:cd15085    80 VNYFGIVSLWSLTLLAYERYNVVCKPM-GGLKLSTKRGYQGLLFIWLFCLFWAVAPLFGWSSYGPEGVQTSCSIGWEE-R 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 191 DWLDVLLPLLFSMlGLLALLLSIVCNTLTSCALLQARLRRKHHCRGTSYHIE----MICQLLVIMLVSCVCWGPLLIHVI 266
Cdd:cd15085   158 SWSNYSYLILYFL-MCFVIPVAIIGFSYGNVLRSLHKLNKKIEQQGGKNCPEeeerAVIMVLAMVIAFLICWLPYTVFAL 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2067138855 267 LLstrVKNEPASFSLL---MVVRMATWNQILDPWVYILLRK 304
Cdd:cd15085   237 IV---VVNPELSISPLaatMPTYFAKTSPVYNPIIYIFLNK 274
7tmA_FMRFamide_R-like cd14978
FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of ...
35-186 8.78e-04

FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes Drosophila melanogaster G-protein coupled FMRFamide (Phe-Met-Arg-Phe-NH2) receptor DrmFMRFa-R and related invertebrate receptors, as well as the vertebrate proteins GPR139 and GPR142. DrmFMRFa-R binds with high affinity to FMRFamide and intrinsic FMRFamide-related peptides. FMRFamide is a neuropeptide from the family of FMRFamide-related peptides (FaRPs), which all containing a C-terminal RFamide (Arg-Phe-NH2) motif and have diverse functions in the central and peripheral nervous systems. FMRFamide is an important neuropeptide in many types of invertebrates such as insects, nematodes, molluscs, and worms. In invertebrates, the FMRFamide-related peptides are involved in the regulation of heart rate, blood pressure, gut motility, feeding behavior, and reproduction. On the other hand, in vertebrates such as mice, they play a role in the modulation of morphine-induced antinociception. Orphan receptors GPR139 and GPR142 are very closely related G protein-coupled receptors, but they have different expression patterns in the brain and in other tissues. These receptors couple to inhibitory G proteins and activate phospholipase C. Studies suggested that dimer formation may be required for their proper function. GPR142 is predominantly expressed in pancreatic beta-cells and mediates enhancement of glucose-stimulated insulin secretion, whereas GPR139 is mostly expressed in the brain and is suggested to play a role in the control of locomotor activity. Tryptophan and phenylalanine have been identified as putative endogenous ligands of GPR139.


Pssm-ID: 410630 [Multi-domain]  Cd Length: 299  Bit Score: 41.46  E-value: 8.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILvksyNRIRIKSKASFLLFAssLVVTD---LLGHLINGSLVLFVYSSHKKWEMFDP-----HRIVCSI 106
Cdd:cd14978    13 FGIIGNILNLVVL----TRKSMRSSTNVYLAA--LAVSDilvLLSALPLFLLPYIADYSSSFLSYFYAyflpyIYPLANT 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 107 FGACMVFFGLsplflgsAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRPYEVQSSRSWCFFHM 186
Cdd:cd14978    87 FQTASVWLTV-------ALTVERYIAVCHPLKARTWCTPRRARRVILIIIIFSLLLNLPRFFEYEVVECENCNNNSYYYV 159
7tmA_P2Y12 cd15150
P2Y purinoceptor 12, member of the class A family of seven-transmembrane G protein-coupled ...
35-311 1.03e-03

P2Y purinoceptor 12, member of the class A family of seven-transmembrane G protein-coupled receptors; The P2Y12 receptor (P2Y12R) is found predominantly on the surface of blood platelets and is activated by adenosine diphosphate (ADP). P2Y12R plays an important role in the regulation of blood clotting and belongs to the G(i) class of the P2Y family of purinergic G protein-coupled receptors. P2Y receptor family is composed of eight subtypes, which are activated by naturally occurring extracellular nucleotides such as ATP, ADP, UTP, UDP, and UDP-sugars. These eight receptors are ubiquitous in human tissues and can be further classified into two subfamilies based on sequence homology and second messenger coupling: a subfamily of five P2Y1-like receptors (P2Y1, P2Y2, P2Y4, P2Y6, and P2Y11Rs) that are coupled to G(q) protein to activate phospholipase C (PLC) and a second subfamily of three P2Y12-like receptors (P2Y12, P2YR13, and P2Y14Rs) that are coupled to G(i) protein to inhibit adenylate cyclase. Several cloned subtypes, such as P2Y3, P2Y5 and P2Y7-10, are not functional mammalian nucleotide receptors. The native agonists for P2Y receptors are: ATP (P2Y2, P2Y12), ADP (P2Y1, P2Y12 and P2Y13), UTP (P2Y2, P2Y4), UDP (P2Y6, P2Y14), and UDP-sugars (P2Y14).


Pssm-ID: 341326  Cd Length: 285  Bit Score: 40.95  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  35 VGILSNSLALFILvksynrIRIKSKASFLLFASSLVVTDLLGHLINGSLVLfvysSHKKWEMFDPHRIVCSIFGACMVF- 113
Cdd:cd15150    13 VGLTMNGLAMRVF------FQIPSKSNFIIFLKNTVISDLLMILTFPFKIL----SDAKLGSWPLRGFVCQVTSVIFYFt 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 114 FGLSPLFLGsAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLW-RPYEVQSSRSWCFFHMEEPKDW 192
Cdd:cd15150    83 MYISILFLG-LITIDRYQKTTRPFKTSNPKNLLGAKILSTVIWASMFALSLPNMILTnRQPTPKNVKKCSLLKSEFGLVW 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 193 LDVlLPLLFSMLGLLALLLSIVCNTLTSCALLQARLRRKhhCRGTSYHIEMICQLLVIMLVSCVCWGPL---LIHVILLS 269
Cdd:cd15150   162 HEI-VNYICQVIFWVNFLIVIVCYTLITKELYKSYKRTR--GVGKVSRKKVNVKVFIIIAVFFICFVPFhfaRIPYTLSQ 238
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2067138855 270 TR-VKNEPASFSLLMVVRMATW----NQILDPWVYILLRKAVLRKMF 311
Cdd:cd15150   239 TRdVFDCTAKNTLFYVKESTLWltslNACLDPFIYFFLCKSFRNSLI 285
7tmA_tmt_opsin cd15086
teleost multiple tissue (tmt) opsin, member of the class A family of seven-transmembrane G ...
33-304 1.36e-03

teleost multiple tissue (tmt) opsin, member of the class A family of seven-transmembrane G protein-coupled receptors; Teleost multiple tissue (tmt) opsins are homologs of encephalopsin. Mouse encephalopsin (or panopsin) is highly expressed in the brain and testes, whereas the teleost homologs are localized to multiple tissues. The exact functions of the encephalopsins and tmt-opsins are unknown. The vertebrate non-visual opsin family includes pinopsins, parapinopsin, VA (vertebrate ancient) opsins, and parietopsins. These non-visual opsins are expressed in various extra-retinal tissues and/or in non-rod, non-cone retinal cells. They are thought to be involved in light-dependent physiological functions such as photo-entrainment of circadian rhythm, photoperiodicity and body color change. Tmt opsins belong to the class A of the G protein-coupled receptors and show strong homology to the vertebrate visual opsins.


Pssm-ID: 320214 [Multi-domain]  Cd Length: 276  Bit Score: 40.49  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  33 MTVGILSNSLALFILVKsYNRIRikSKASFLLFASSLvvTDLLGhLINGSLVLFVYSSHKKWEMFDphrIVCSIFGACMV 112
Cdd:cd15086    11 LTFGFLNNLLVLVLFCK-YKVLR--SPINLLLLNISL--SDLLV-CVLGTPFSFAASTQGRWLIGE---HGCRWYGFANS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 113 FFGLSPLFLGSAMAVERCIGVTRPifhSTAIASHHMKRLLGLT--WLLAALVAVFPLLLWRPYEVQSSRSWCF--FHMEE 188
Cdd:cd15086    82 LFGIVSLISLAVLSYERYCTLLRP---TEADVSDYRKAWLGVGgsWLYSLLWTLPPLLGWSSYGPEGPGTTCSvqWTSRS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 189 PKDWLDVLLPLLFSMLGLLALLlsIVCNTLTSCALLQARLRRKHHCRGTSYHIemicQLLVIMLVSC--VCWGPLLIhVI 266
Cdd:cd15086   159 ANSISYIICLFIFCLLLPFLVM--VYCYGRLLYAIKQVGKINKSTARKREQHV----LLMVVTMVICylLCWLPYGV-MA 231
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2067138855 267 LLSTRVKNEPASFSLLMVVR-MATWNQILDPWVYILLRK 304
Cdd:cd15086   232 LLATFGKPGLVTPVASIVPSiLAKSSTVVNPIIYVFMNK 270
7tmA_DmOct-betaAR-like cd15066
Drosophila melanogaster beta-adrenergic receptor-like octopamine receptors and similar ...
24-169 1.67e-03

Drosophila melanogaster beta-adrenergic receptor-like octopamine receptors and similar receptors in bilateria; member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes Drosophila beta-adrenergic-like octopamine receptors and similar proteins. The biogenic amine octopamine is the invertebrate equivalent of vertebrate adrenergic neurotransmitters and exerts its effects through different G protein-coupled receptor types. Insect octopamine receptors are involved in the modulation of carbohydrate metabolism, muscular tension, cognition and memory. The activation of octopamine receptors mediating these actions leads to an increase in adenylate cyclase activity, thereby increasing cAMP levels. In Drosophila melanogaster, three subgroups have been classified on the basis of their structural homology and functional equivalents with vertebrate beta-adrenergic receptors: DmOctBeta1R, DmOctBeta2R, and DmOctBeta3R.


Pssm-ID: 320194 [Multi-domain]  Cd Length: 265  Bit Score: 40.44  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISMTVGILSNSLaLFILVKSYNRIRIKSKasflLFASSLVVTDLLGHLI----NGSLVLFvysshKKWeMFDP 99
Cdd:cd15066     1 LKGFAMTLIILAAIFGNLL-VIISVMRHRKLRVITN----YFVVSLAMADMLVALCamtfNASVEIT-----GRW-MFGY 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 100 hrIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLL 169
Cdd:cd15066    70 --FMCDVWNSLDVYFSTASILHLCCISVDRYYAIVQPLEYPSKMTKRRVAIMLANVWISPALISFLPIFL 137
7tmA_MrgprA cd15105
mas-related G protein-coupled receptor subtype A, member of the class A family of ...
30-268 1.95e-03

mas-related G protein-coupled receptor subtype A, member of the class A family of seven-transmembrane G protein-coupled receptors; The Mas-related G-protein coupled receptor (Mrgpr) family constitutes a group of orphan receptors exclusively expressed in nociceptive primary sensory neurons and mast cells in the skin. Members of the Mrgpr family have been implicated in the modulation of nociception, pruritus (itching), and mast cell degranulation. The Mrgpr family in rodents and humans contains more than 50 members that can be grouped into 9 distinct subfamilies: MrgprA, B, C (MrgprX1), D, E, F, G, H (GPR90), and the primate-specific MrgprX subfamily. Some Mrgprs can be activated by endogenous ligands such as beta-alanine, adenine (a cell metabolite and potential transmitter), RF-amide related peptides, or salusin-beta (a bioactive peptide). However, the effects of these agonists are not clearly understood, and the physiological role of the individual receptor family members remains to be determined.


Pssm-ID: 320233  Cd Length: 276  Bit Score: 40.11  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  30 IISMTVGILSNSLALFILVKSYNRirikskASFLLFASSLVVTD---LLGHLINGSLVLFVYSShkkwemfdPHRIVCSI 106
Cdd:cd15105     8 IIFGLVGLTGNAIVFWLLGFRLHR------NAFSVYILNLALADflfLLCHIIDSTLLLLKVFY--------PNIIFLPC 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 107 FGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFplllwrpyevqsSRSWC-FFH 185
Cdd:cd15105    74 FYTIMMVLYITGLSMLSAISTERCLSVLCPIWYRCRRPEHTSTVMCAVIWVLSLLICIL------------NRYFCgFLD 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 186 MEEPKDwlDVLLPLLFSMLGLLALLLSIVCntLTSCALLQARLRRKHHCRGTSYHIEMICQLLVIMLvscvCWGPLLIHV 265
Cdd:cd15105   142 TKYEND--SVCLASNFFTAAYLMFLFVVLC--LSSLALLARLFCGAGQMKLTRLYVTIMLTVLVFLL----CGLPFGIYW 213

                  ...
gi 2067138855 266 ILL 268
Cdd:cd15105   214 FLL 216
7tmA_Opsin_Gq_invertebrates cd15337
invertebrate Gq opsins, member of the class A family of seven-transmembrane G protein-coupled ...
24-173 2.39e-03

invertebrate Gq opsins, member of the class A family of seven-transmembrane G protein-coupled receptors; The invertebrate Gq-coupled opsin subfamily includes the arthropod and mollusc visual opsins. Like the vertebrate visual opsins, arthropods possess color vision by the use of multiple opsins sensitive to different light wavelengths. The invertebrate Gq opsins are closely related to the vertebrate melanopsins, the primary photoreceptor molecules for non-visual responses to light, and the R1-R6 photoreceptors, which are the fly equivalent to the vertebrate rods. The Gq opsins belong the class A of the G protein-coupled receptors and possess seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320459 [Multi-domain]  Cd Length: 292  Bit Score: 40.00  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISMtVGILSNSLALFILVKSYNRIRIKSkasflLFASSLVVTDLLGHLINGSLVLFVYSSHKKWeMFDPhrIV 103
Cdd:cd15337     3 IGIYIAIVGI-LGVIGNLLVIYLFSKTKSLRTPSN-----MFIINLAISDFGFSAVNGFPLKTISSFNKKW-IWGK--VA 73
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2067138855 104 CSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFhstaiASHHMKR-----LLGLTWLLAALVAVFPLLLWRPY 173
Cdd:cd15337    74 CELYGFAGGIFGFMSITTLAAISIDRYLVIAKPLE-----AMKKMTFkrafiMIIIIWLWSLLWSIPPFFGWGRY 143
7tmA_Mrgpr cd14973
mas-related G protein-coupled receptors, member of the class A family of seven-transmembrane G ...
102-302 2.59e-03

mas-related G protein-coupled receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; The Mas-related G-protein coupled receptor (Mrgpr) family constitutes a group of orphan receptors exclusively expressed in nociceptive primary sensory neurons and mast cells in the skin. Members of the Mrgpr family have been implicated in the modulation of nociception, pruritus (itching), and mast cell degranulation. The Mrgpr family in rodents and humans contains more than 50 members that can be grouped into 9 distinct subfamilies: MrgprA, B, C (MrgprX1), D, E, F, G, H (GPR90), and the primate-specific MrgprX subfamily. Some Mrgprs can be activated by endogenous ligands such as beta-alanine, adenine (a cell metabolite and potential transmitter), RF-amide related peptides, or salusin-beta (a bioactive peptide). However, the effects of these agonists are not clearly understood, and the physiological role of the individual receptor family members remains to be determined. Also included in this family is Mas-related G-protein coupled receptor 1-like (MAS1L) which is only found in primates. The angiotensin-II metabolite angiotensin is an endogenous ligand for MAS1L.


Pssm-ID: 320104 [Multi-domain]  Cd Length: 272  Bit Score: 39.93  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 102 IVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHStaiaSHHMKRL----LGLTWLLAALVAV----FPLLLWRPY 173
Cdd:cd14973    69 ALCRLLATLMFFSYTVGLSLLAAISTERCLSVLFPIWYR----CHRPKHLsavvCALLWALSLLLSVlesyFCGFLFWKF 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 174 EVQSSRSWCFFHMEepkdWLDVLLPLLFsmlgllalllsivcntlTSCALLQARLRRKHHCRGTS--YHIEMicqLLVIM 251
Cdd:cd14973   145 NESACRTFNFLSAL----LFLLLFLVMC-----------------VSSLTLLIRVQCSSQRRPPTrlYVVIL---LTVLV 200
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2067138855 252 LVscVCWGPLLIHVILLSTRvKNEPASFSLLMVVRMATWNQILDPWVYILL 302
Cdd:cd14973   201 FL--LCGLPLGIYWFLLLWF-SNYLFHTFHPISDLLSCVNSSANPIIYFFV 248
7tmA_Gal1_R cd15098
galanin receptor subtype 1, member of the class A family of seven-transmembrane G ...
34-306 2.76e-03

galanin receptor subtype 1, member of the class A family of seven-transmembrane G protein-coupled receptors; The G protein-coupled galanin receptors bind galanin, a neuropeptide that is widely expressed in the brain, peripheral tissues, and endocrine glands. Three receptors subtypes have been so far identified: GAL1, GAL2, and GAL3. The specific functions of each subtype remains mostly unknown, although galanin is thought to be involved in a variety of neuronal functions such as hormone release and food intake. Galanin is implicated in numerous neurological and psychiatric diseases including Alzheimer's disease, depression, eating disorders, epilepsy and stroke, among many others.


Pssm-ID: 320226 [Multi-domain]  Cd Length: 282  Bit Score: 39.71  E-value: 2.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  34 TVGILSNSLALFILVKSYNRIRIKSKASFLLfasSLVVTDLLGHLINGSLVLFVYSShKKWemfdphrivcsIFGACMVF 113
Cdd:cd15098    12 CLGVLGNSLVITVLARVKPGKRRSTTNVFIL---NLSIADLFFLLFCVPFQATIYSL-PEW-----------VFGAFMCK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 114 FG--------LSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVfPLLLWRPYEVQSSRSWCFFH 185
Cdd:cd15098    77 FVhyfftvsmLVSIFTLVAMSVDRYIAVVHSRTSSSLRTRRNALLGVLVIWVLSLAMAS-PVAVHQDLVHHWTASNQTFC 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 186 MEE--PKDW----------LDVLLPLLFsmlgllalllsivcntLTSCALL-------QARLRRKHHCRGTSYHIEMIcq 246
Cdd:cd15098   156 WENwpEKQQkpvyvvctfvFGYLLPLLL----------------ITFCYAKvlnhlhkKLKNMSKKSERSKKKTAQTV-- 217
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2067138855 247 lLVIMLVSCVCWGPLliHVILLSTRVKNEP---ASFSLLMVVR-MATWNQILDPWVYILL----RKAV 306
Cdd:cd15098   218 -LVVVVVFGISWLPH--HIIHLWVEFGDFPltqASFVLRITAHcLAYANSCVNPIIYAFLsenfRKAY 282
7tmA_alpha2_AR cd15059
alpha-2 adrenergic receptors, member of the class A family of seven-transmembrane G ...
24-172 5.68e-03

alpha-2 adrenergic receptors, member of the class A family of seven-transmembrane G protein-coupled receptors; The alpha-2 adrenergic receptors (or adrenoceptors) are a subfamily of the class A rhodopsin-like GPCRs that share a common architecture of seven transmembrane helices. This subfamily consists of three highly homologous receptor subtypes that have a key role in neurotransmitter release: alpha-2A, alpha-2B, and alpha-2C. In addition, a fourth subtype, alpha-2D is present in ray-finned fishes and amphibians, but is not found in humans. The alpha-2 receptors are found in both central and peripheral nervous system and serve to produce inhibitory functions through the G(i) proteins. Thus, the alpha-2 receptors inhibit adenylate cyclase, which decreases cAMP production and thereby decreases calcium influx during the action potential. Consequently, lowered levels of calcium will lead to a decrease in neurotransmitter release by negative feedback. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320187 [Multi-domain]  Cd Length: 261  Bit Score: 38.48  E-value: 5.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIIsMTVGILSNSLaLFILVKSYNRIRIKSKasflLFASSLVVTDLLghliNGSLVL---FVYSSHKKWEMfdpH 100
Cdd:cd15059     3 ISSIVSVV-ILLIIVGNVL-VIVAVLTSRKLRAPQN----WFLVSLAVADIL----VGLLIMpfsLVNELMGYWYF---G 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2067138855 101 RIVCSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVAVFPLLLWRP 172
Cdd:cd15059    70 SVWCEIWLALDVLFCTASIVNLCAISLDRYWSVTQAVEYNLKRTPRRAKAMIAAVWIISAVISLPPLFGWKD 141
7tmA_Peropsin cd15073
retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of ...
24-182 5.80e-03

retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of seven-transmembrane G protein-coupled receptors; Peropsin, also known as a retinal pigment epithelium-derived rhodopsin homolog (RRH), is a visual pigment-like protein found exclusively in the apical microvilli of the retinal pigment epithelium. Peropsin belongs to the type 2 opsin family of the class A G-protein coupled receptors. Peropsin presumably plays a physiological role in the retinal pigment epithelium either by detecting light directly or monitoring the levels of retinoids, the primary light absorber in visual perception, or other pigment-related compounds in the eye.


Pssm-ID: 320201 [Multi-domain]  Cd Length: 280  Bit Score: 38.56  E-value: 5.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  24 LSVTASIISmtvgILSNSLALFILVKsYNRIRIKSKAsfllFASSLVVTDLlGHLINGSLVLFVYSSHKKWEMfdpHRIV 103
Cdd:cd15073     6 YLIVAGIIS----TISNGIVLVTFVK-FRELRTPTNA----LIINLAVTDL-GVSIIGYPFSAASDLHGSWKF---GYAG 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2067138855 104 CSIFGACMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLtWLLAALVAVFPLLLWRPYEVQSSRSWC 182
Cdd:cd15073    73 CQWYAFLNIFFGMASIGLLTVVAVDRYLTICRPDLGRKMTTNTYTVMILLA-WTNAFFWAAMPLVGWASYALDPTGATC 150
7tmA_P2Y11 cd15376
P2Y purinoceptor 11, member of the class A family of seven-transmembrane G protein-coupled ...
30-163 7.48e-03

P2Y purinoceptor 11, member of the class A family of seven-transmembrane G protein-coupled receptors; P2Y11 belongs to the P2Y receptor family of purinergic G-protein coupled receptors. The activation of P2Y11 is a major pathway of macrophage activation that leads to the release of cytokines. The P2Y receptor family is composed of eight subtypes, which are activated by naturally occurring extracellular nucleotides such as ATP, ADP, UTP, UDP, and UDP-glucose. These eight receptors are ubiquitous in human tissues and can be further classified into two subfamilies based on sequence homology and second messenger coupling: a subfamily of five P2Y1-like receptors (P2Y1, P2Y2, P2Y4, P2Y6, and P2Y11Rs) that are coupled to G(q) protein to activate phospholipase C (PLC) and a second subfamily of three P2Y12-like receptors (P2Y12, P2YR13, and P2Y14Rs) that are coupled to G(i) protein to inhibit adenylate cyclase. Several cloned subtypes, such as P2Y3, P2Y5, and P2Y7-10, are not functional mammalian nucleotide receptors. The native agonists for P2Y receptors are: ATP (P2Y2, P2Y12), ADP (P2Y1, P2Y12, and P2Y13), UTP (P2Y2, P2Y4), UDP (P2Y6, P2Y14), and UDP-glucose (P2Y14).


Pssm-ID: 320498 [Multi-domain]  Cd Length: 284  Bit Score: 38.52  E-value: 7.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  30 IISMTVGILSNSLALFILVKSYNRIRikskASFLLFASSLVVTDLLGHLingSLVLFV--YSSHKKWemfdphrivcsIF 107
Cdd:cd15376     8 GVEFLVAVLGNGLALWLFVTRERRPW----HTGVVFSFNLAVSDLLYAL---SLPLLAayYYPPKNW-----------RF 69
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2067138855 108 G--AC----MVFFG--LSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAALVA 163
Cdd:cd15376    70 GeaACklerFLFTCnlYGSIFFITCISLNRYLGIVHPFFTRSHVRPKHAKLVSLAVWLLVAALS 133
7tmA_Mel1 cd15209
melatonin receptor 1, member of the class A family of seven-transmembrane G protein-coupled ...
30-302 9.07e-03

melatonin receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors; Melatonin (N-acetyl-5-methoxytryptamine) is a naturally occurring sleep-promoting chemical found in vertebrates, invertebrates, bacteria, fungi, and plants. In mammals, melatonin is secreted by the pineal gland and is involved in regulation of circadian rhythms. Its production peaks during the nighttime, and is suppressed by light. Melatonin is shown to be synthesized in other organs and cells of many vertebrates, including the Harderian gland, leukocytes, skin, and the gastrointestinal (GI) tract, which contains several hundred times more melatonin than the pineal gland and is involved in the regulation of GI motility, inflammation, and sensation. Melatonin exerts its pleiotropic physiological effects through specific membrane receptors, named MT1A, MT1B, and MT1C, which belong to the class A rhodopsin-like G-protein coupled receptor family. MT1A and MT1B subtypes are present in mammals, whereas MT1C subtype has been found in amphibians and birds. The melatonin receptors couple to G proteins of the G(i/o) class, leading to the inhibition of adenylate cyclase.


Pssm-ID: 320337 [Multi-domain]  Cd Length: 279  Bit Score: 38.22  E-value: 9.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855  30 IISMTVGILSNSLAlfILVKSYNRiriKSKASFLLFASSLVVTDLLGHLINGSLVLfVYSSHKKWEMFDPHrivCSIFGA 109
Cdd:cd15209     8 IVTIVVDVLGNLLV--ILSVLRNK---KLRNAGNIFVVSLSVADLVVAIYPYPLIL-HAIFHNGWTLGQLH---CQASGF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 110 CMVFFGLSPLFLGSAMAVERCIGVTRPIFHSTAIASHHMKRLLGLTWLLAaLVAVFPLLLWRPYEVQSSRSWCFFHMEEP 189
Cdd:cd15209    79 IMGLSVIGSIFNITAIAINRYCYICHSLQYDRLYSLRNTCCYLCLTWLLT-VLAVLPNFFIGSLQYDPRIYSCTFAQTVS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067138855 190 KDW------LDVLLPLLFSmlgllalllsIVCNTLTSCALLQARLRRKHHCRG--TSYHIEMICQLLVIMLVSCVCWGPL 261
Cdd:cd15209   158 TVYtitvvvIHFLLPLLIV----------SFCYLRIWVLVLQVRQRVKPDQRPklKPADVRNFLTMFVVFVLFAVCWAPL 227
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2067138855 262 -LIHVILLSTRVKNEPASFSLLMVVR--MATWNQILDPWVYILL 302
Cdd:cd15209   228 nFIGLAVAINPKEMAPKIPEWLFVASyfMAYFNSCLNAIIYGLL 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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