2P01,2FCW,2FTU


Conserved Protein Domain Family
RAP_D3

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cd14808: RAP_D3 
Click on image for an interactive view with Cn3D
C-terminal receptor-associated protein (RAP), Domain 3
This subfamily is the C-terminal domain (D3) of receptor-associated protein, RAP, an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. D3 is required for folding and trafficking of low-density lipoprotein receptor-related protein (LRP). In the mildly acidic pH of the Golgi, unfolding of RAP-D3 helical bundle facilitates dissociation of RAP from the LDL receptor type A (LA) repeats of LDLR family proteins. Also, RAP has 3 regions that interact weakly with heparin, two regions located in D3 and one in RAP domain 2 (D2). The double module of complement type repeats, CR56, of LRP binds many ligands including alpha2-macroglobulin, which promotes the catabolism of the Abeta-peptide implicated in Alzheimer's disease.
Statistics
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PSSM-Id: 269815
Aligned: 28 rows
Threshold Bit Score: 88.495
Created: 17-Jul-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Comment:Two pairs of paired lysine interactions give high affinity binding of protein ligands to LRP1
  • Structure:2FCW: Human RAP domain 3 (D3) binds LDL receptor ligand-binding modules 3-4; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        ##  #  ##     #  ##                  #      #
2P01_A    218 FEEPRVIDLWDLAQSANl-TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHaesvgdgervsrSREKHALLEGR 296 human
2FCW_A      4 FEEPRVIDLWDLAQSANl-TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHaesvgdgervsrSREKHALLEGR 82  human
NP_649950 283 FIEPKVQGLWRVAQASNf-TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGekv-------kdKSSRFEEMEDQ 354 fruit fly
EFX84118  262 FEEPKVQGLWKIALNGDf-TSEELESLRTELRHYEQRLQKLRFIQAQHSLQQAKTELgn--------ksEFQDANELRQR 332 common water flea
EEC15467  255 FEEEKVQQLWKLAQQADf-TPTELNSLREELSHYEHRLRKLHHFRSELQLKADLTGGkl--------dtDPDEVKTLRQR 325 black-legged tick
ABM55634  265 FVEPKVQGLWKLAVNSNf-TNSELESFRTELHHYEKRLLKLRNLHLEAAIGKNSKEKkls-------geKSKDFQDIEDL 336 hibiscus mealybug
EEB17579  265 FIEPQVQNLWMLAVNSNf-TNDELESLKTELLHYEHRLMKLRHLHAEAEFHLSKSPKvtg-------ekPAQGLLSTDEI 336 human body louse
EFN72470  260 FIEPKVQGLWKIALEAKf-SPEELASLKEELLHYESRLLKLRHLHAEEALKAAQNEQv-----------YGLDNSTTEQH 327 Florida carpenter ant
NP_506187 218 FNEPRVKRLWKLAQENEklTPHELSVLKDELSHFESQLKKIEFHKEEVSRLQEDAEErgk------dksQVYENLELSIK 291 Caenorhabditis ele...
ADD37989  230 FTHPEVQDLWRFALDANfsEDELQDVIKKELILYEKKLNKIRHLEEELKMVDERQGGkynd-----fqdHSEGRKILDQK 304 salmon louse
Feature 1        #                       
2P01_A    297 TKELGYTVKKHLQDLSGRISrarHNEL 323 human
2FCW_A     83 TKELGYTVKKHLQDLSGRISrarHNEL 109 human
NP_649950 355 LKKQTRKVEKLQENIEKTIFk--HTEL 379 fruit fly
EFX84118  333 IKLQSRKVEKLHADLEARITq-rHLEL 358 common water flea
EEC15467  326 VKQYNHKVGKLHGELEGRILq-rRTEL 351 black-legged tick
ABM55634  337 IKKQSRKIEKLHSHLESKIVy--RNEL 361 hibiscus mealybug
EEB17579  337 VKKQEKKVAKLRLDLETKIMq-kHIEL 362 human body louse
EFN72470  328 IKKHIRTVQKLHIDLENKILq-kHTEL 353 Florida carpenter ant
NP_506187 292 HEKLNRKARKLEKYIEEKIIi--HREL 316 Caenorhabditis elegans
ADD37989  305 LKKHEEAIEELRIKIKHLILt-rHTEL 330 salmon louse

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