2E3U


Conserved Protein Domain Family
KH-I_Dim2p_like_rpt2

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cd22390: KH-I_Dim2p_like_rpt2 
second type I K homology (KH) RNA-binding domain found in Pyrococcus horikoshii Dim2p and similar proteins
The family includes a group of conserved KH domain-containing protein mainly from archaea, such as Dim2p homologues from Pyrococcus horikoshii and Aeropyrum pernix. Dim2p acts as a preribosomal RNA processing factor that has been identified as an essential protein for the maturation of 40S ribosomal subunit in Saccharomyces cerevisiae. It is required for the cleavage at processing site A2 to generate the pre-20S rRNA and for the dimethylation of the 18S rRNA by 18S rRNA dimethyltransferase, Dim1p. Dim2p contains two K-homology (KH) RNA-binding domains. The model corresponds to the second one.
Statistics
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PSSM-Id: 411818
Aligned: 20 rows
Threshold Bit Score: 122.331
Created: 12-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    # ### #####  ##  ##    ####                         
2E3U_A       110 FRLLNEGEYLEIINLTdiiigneKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGnPIQIEIAKTAIEKLA 189 Pyrococcus hori...
Q8TH62        88 RLLREEDASLEVIDLYelv-grnPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGtPRQLQIARKAIEMLA 166 Methanopyrus ka...
Q9HN69        74 TLLDDDMRMFDTIDIGraa--rnDNDLRRKKGRLIGENGRTRELMEELTGASVVIYGSTFGVIGqPSEVDVARSAAEMLL 151 Halobacterium s...
ABK77414      78 MTLLDEESALHVVDLRefa-grsPAQIARVKSRIIGAGGRARRNIEALSGTSISVYGRTVSIIGrADKLRLAVDAISRLS 156 Cenarchaeum sym...
A0B5J6        73 ALLDDDMLMLDILDLSsla--atKNDLIRIKGRIIGKDGKTRELMESLTGARISVYGKTVSIIGyPEQIKVVRSALEMLI 150 Methanothrix th...
ABM81229      82 MRVLDDDQVLVVIDLKqyv-gdsPNHLQRVKGRIIGEKGRARKTIEEMTGTYISIYDNYVAIIGdFETANIAKQAIEMLI 160 Hyperthermus bu...
ABX13305      78 MTLLKGENTLHVIDLRefa-gksNANVERIKGRIIGEGGRARRNMENLSSTHISVYGKTVSIIGdASKLRLAVDAISSIS 156 Nitrosopumilus ...
OLS22133     113 LKLAEDNYYLEIIRLKplt-gpqQSQIRRVKSRIIGSAGKTKETIEELTGCSLVVLGGTVSVIGeFEKIGDAKDAILNII 191 Candidatus Heim...
OQX50438      75 FQLFKNGKILEILDLNqyt--rtKNDLLREKGRVIGKNGKTREYIEHMTGAYISVYGKTVSFIGnFEEVYDAKKAVQILL 152 Candidatus Cloa...
WP_010900825  82 MLLFEDGMQLVIISLRefa-kpgSSRIAQIKARVIGTGGKTRTIIEELTGSFISVYGDTVSIIGdYLAVTYAEEAINMII 160 Thermoplasma ac...
Feature 1                         
2E3U_A       190 RGSpHGSVYRYLERRKK 206 Pyrococcus horikoshii OT3
Q8TH62       167 SGApHGRVYRFLEDQRR 183 Methanopyrus kandleri
Q9HN69       152 DGApHGSVYSFLERKRS 168 Halobacterium salinarum
ABK77414     157 EGSmHGSVYGRLESARR 173 Cenarchaeum symbiosum A
A0B5J6       151 DGApHGNVYSFLEKKRR 167 Methanothrix thermoacetophila PT
ABM81229     161 QGRqHSTVYRFLERTMF 177 Hyperthermus butylicus DSM 5456
ABX13305     157 SGSmHGAVYDKLEAANR 173 Nitrosopumilus maritimus SCM1
OLS22133     192 KGYdIENVLSKLEELKR 208 Candidatus Heimdallarchaeota archaeon LC_2
OQX50438     153 EGKpHSAAYYYLENAAK 169 Candidatus Cloacimonas sp. 4484_209
WP_010900825 161 NGKkHRTVYEFLERKAR 177 Thermoplasma acidophilum

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