1PXY


Conserved Protein Domain Family
CH_AtFIM_like_rpt2

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cd21296: CH_AtFIM_like_rpt2 
second calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
The Arabidopsis thaliana fimbrin (AtFIM) family includes fimbrin-1, -2, -3, -4, and -5, which cross-link actin filaments (F-actin) in a calcium independent manner. They stabilize and prevent F-actin depolymerization mediated by profilin. They act as key regulators of actin cytoarchitecture, and are probably involved in the cell cycle, cell division, cell elongation, and cytoplasmic tractus. AtFIM5 is an actin bundling factor that is required for pollen germination and pollen tube growth. Members of this family contain four copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409145
Aligned: 8 rows
Threshold Bit Score: 210.837
Created: 9-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative actin
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #   #                                                  # ##  ## #     
1PXY_A       143 DDVEELLRLPPEKVLLKWMNFHLKKGGykktvsNFSADLKDAQAYAFLLNVLAPEHCdpatldakDPLERAELVLSHAER 222 thale cress
Q9FJ70       261 EDIEEFLRLPPEKVLLKWMNFHLKKGGykktvgNFSSDLKDAQAYAYLLNVLAPEHCdpatlnaeDDLERANMVLEHAER 340 thale cress
Q7G188       260 DDVEELLRLPPEKVLLKWMNFHLKKGGykktvsNFSADLKDAQAYAFLLNVLAPEHCdpatldakDPLERAELVLSHAER 339 thale cress
Q9FKI0       259 QDAEELMGLAPEKVLLKWMNFHLKKAGyekqvtNFSSDLKDGEAYAYLLNALAPEHSthvaletkDPTERAKKVLEQAEK 338 thale cress
O50064       261 KDVEELMSLPPEKILLRWMNFQLRKTEykktvtNFSSDVKDAEAYTNLLNVLAPEHKnpshlavkSSFERAKLVLEHADK 340 thale cress
Q9SJ84       253 QDVEELMGLAPEKLLLKWMNFHLKKAGyekqvtNFSSDVKDGEAYAYLLNALAPEHStnvtleikDPSERATKVLEQAEK 332 thale cress
XP_024385429 262 EEFEELWSMPAEKILLRWMNFHLRKAGykkivsNFTSDVKDATAYTLLLNQLAPESCsldplhveDVYERAKAVLAQAER 341 Physcomitrella ...
EFJ21030     259 EEVEELLHLPAEKMLLKWMNFHLKKCGykkevtNFSSDVKDGEAYTLLLHALAPESCslap-lekDGLERAALLLSQAEK 337 Selaginella moe...
Feature 1          #########    # ## ##  ##  #
1PXY_A       223 MNCKRYLTAEEIveGSSTLNLAFVAQIFH 251 thale cress
Q9FJ70       341 MNCKRYLTAEEIveGSSYLNLAFVAQIFH 369 thale cress
Q7G188       340 MNCKRYLTAEEIveGSSTLNLAFVAQIFH 368 thale cress
Q9FKI0       339 LDCKRYLSPKDIvdGSANLNLAFVAQIFQ 367 thale cress
O50064       341 MGCRRYLTAKDIveGSPNLNLAFVAHIFQ 369 thale cress
Q9SJ84       333 LDCKRFLSPKDIveGSANLNLAFVAQLFH 361 thale cress
XP_024385429 342 INCRKYITAKDLvdGSANLNLAFVAHLFH 370 Physcomitrella patens
EFJ21030     338 INCKKYLSPKDVvdGSANLNLAFIAHLFH 366 Selaginella moellendorffii

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