1SFC,1URQ,4JEH,1SFC,3HD7,3C98,1HVV,1JTH,1L4A,2M8R


Conserved Protein Domain Family
SNARE_syntaxin1

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cd15880: SNARE_syntaxin1 
Click on image for an interactive view with Cn3D
SNARE motif of syntaxin 1
Syntaxin-1 belongs to the Qa subgroup of SNAREs and interacts with SNAP-25 (Qb/Qc) and the R-SNARE VAMP2 (also called synaptobrevin-2). The complex plays a role in exocytosis of synaptic vesicles. SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins, which consist of coiled-coil helices (called SNARE motifs) that mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complexes mediate membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle.
Statistics
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PSSM-Id: 277233
Aligned: 23 rows
Threshold Bit Score: 114.53
Created: 5-Apr-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layerMunc18
Conserved site includes 45 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:1URQ, Rattus norvegicus neuronal SNARE complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # ## ###### ### ## ### ## ### ## ###### ###### ###### ###       
1SFC_B        12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80  Norway rat
1URQ_B         7 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 75  Norway rat
XP_001629417 200 ALGDIEARHRDIITLEKNIQELHEMFQDMYMLVESQGEMIDRIEFNVEQAVDYVQSAKTDTKKALTYQS 268 starlet sea anemone
NP_524475    194 TLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQS 262 fruit fly
CCD75113     162 SLADIEARHQDIMKLEKSIKELHDMFMDMAMLVESQGEMIDRIEYNVEQAVDYIESAKADTKKAVKYQS 230 Schistosoma mansoni
EFX68032     196 TLADIEARHADIMKLENSIRELHDMFMDMAMLVENQGEMIDRIEYNVEHAVDYVQTATQDTKKALKYQS 264 common water flea
AAK18276     191 TLRDIEARHNDIIKLESSIRELHDMFMDMAMLVESQGEMIDRIEYNVEQSVDYVETAKMDTKKAVKYQS 259 purple urchin
AAC47500     197 SLMDIEARHNDIMKLEQSIKELHDMFMDMAMLVESQGEMIDRIEHNVEKAVDYVETAAADTKKAMKYQS 265 medicinal leech
NP_001022615 192 TLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQS 260 nematode
AAK70495     192 TLADIEARHNDIIKLESSIRELHDMFMDMAMLVESQGEMIDRIEYQVEHAKDYIEAAKQDTKKALVYQS 260 Atlantic horseshoe crab

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