Conserved Protein Domain Family
RRM2_PTBPH3

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cd12692: RRM2_PTBPH3 
RNA recognition motif 2 (RRM2) found in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)
This subfamily corresponds to the RRM2 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410092
Aligned: 5 rows
Threshold Bit Score: 180.519
Created: 22-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #                          # # #    # #                            #  ## 
Q6ICX4        97 PNRILLVTIHHmLYPITVDVLHQVFSPYGFVEKLVTFQKSaGFQALIQYQvQQCAASARTALQGRNIYDGCCQLDIQFSN 176 thale cress
ADE75620     102 PNRILLVTIHHlLFPITVEVLHQVFSPCGFVEKIVTFQKSaGLQALIQYTsQQNAVQAKNNLQGRNIYDGCCQLDIQFSN 181 Sitka spruce
XP_019577019  97 PNRILLVTVHHmLYPITVDVLHQVFSPYGFVEKLVTFQKSaGFQALIQYQaQQCAASARTALQGRNIYDGCCQLDIQFSN 176 Chinese rufous ...
PNR41096      56 PNRILLITIHNpLYPITVDVLHQVFSPHGFVEKIVTFTKSaGLQALLQYAsQSSAVQARSTLQGRNIYDGCCTLDIQYSN 135 Physcomitrella ...
EFJ22438     103 PNRILLVTIHHpLYPITVDVLHQVFNPHGHVEKIVTFQKSaGLQALIQYNnQQSAVYAKSLLQGRNIYDGCCTLDIQFSN 182 Selaginella moe...
Feature 1           #####
Q6ICX4       177 LEELQVNY 184 thale cress
ADE75620     182 LNGLQVHY 189 Sitka spruce
XP_019577019 177 LDELQVNY 184 Chinese rufous horseshoe bat
PNR41096     136 LQELQVNY 143 Physcomitrella patens
EFJ22438     183 LQELQVNF 190 Selaginella moellendorffii

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