Conserved Protein Domain Family
CBM9_like_2

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cd09618: CBM9_like_2 
DOMON-like type 9 carbohydrate binding module
Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.
Statistics
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PSSM-Id: 187676
Aligned: 73 rows
Threshold Bit Score: 138.157
Created: 21-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family
  • Comment:ligand may be a carbohydrate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
ADQ78478       25 SVEAVRITKPIi-IDGILDEEVYs----------QHKPTGGFLQiqPYNGKPAMe-----STEAYFFYDESAIYVGATLY 88   Paludibacter ...
YP_002761589   48 AVAIPRLEGTNt-VDGVLNEPVWq----------QAATLTGFSQffPNDGIAAQd-----STEVLVWYTGTALHVGVRAY 111  Gemmatimonas ...
YP_003270520   50 SIVARRVAPGAveLDGVMNETDWq----------QAAPVRELRRarPVEDGRPGl----gDAEFRLLYDRNALYIGVRVQ 115  Haliangium oc...
EDM81928       37 ELQAVRARGPVt-VDGRADDEVWa----------RAPVGSGFLErtPDLGAEPPl-----ETRVRVAYDDAALYVLVEGE 100  Plesiocystis ...
EAR03028       72 IRSVVKITDKVv-IDGEVNELFWe----------AIEPLNSTQKv-PNAGDQPTq-----KTEIRIAYDEKYLYLSGRLF 134  Flavobacteria...
YP_002756473   58 LAIAPKLGDFL--LLPNHSAVAA-----------QMLRVPHFIEryPDDGGRPDd-----ATTAYLGYTHNAFYAAFVCK 119  Acidobacteriu...
EFI78113       48 SIPLADASVPL--LDHPLTLADFpamaprpdlkdKLGHLTQFIQntPVDGAAATe-----PTEVYLGRTNNTLYIVFLCF 120  Acidobacteriu...
EAS46112        7 LLCIPTVSAGIv-IDGVLDEEEWa----------GAEIYTDFVTvePLTGDSAKy-----GTQVRVITNSDGIFVGFSNY 70   gamma proteob...
EFQ20347      877 NYLACFRSGSApyLDGLLSDECW-----------QDTEEVRLTF--PKDSSRPAsaaqmeAPLVMLTCDNEYLYLAGSFP 943  Planctomyces ...
EDL56914      859 VYLCRFTKTRPv-LDGLLSDECWqdan---eltlSEKPAAGMENq-ADAGVDPLd-----RAFVLLSYDNENLYIAASIP 928  Planctomyces ...
Feature 1                                      #                  # #                             
ADQ78478       89 DSk---pDSIFNFLTERDDmg---mSDFFGVYIDPYNQGQLAYGFFITPSGVQVDlka-----------ikrDGDNEDt- 150  Paludibacter ...
YP_002761589  112 APk----GTVRATLADRDKit---qDDNIQLFLGTYNDSRQAMVFAVNPFGIQSDgvltetgassgggflssASRGREsn 184  Gemmatimonas ...
YP_003270520  116 QPp----GVARAQIRPRDDlg---nDDSINIYLKSRSAGGDGYVFRINPLGIKKDi----------------LIIGYDqt 172  Haliangium oc...
EDM81928      101 VEg---pQDLQVRTLRRDSgai-faDDTIAVKIDPHHDRRSGLTFGANVDGAQVDtm-------------vlEDGRISir 163  Plesiocystis ...
EAR03028      135 DNe---pNKINTNTKRRDDft--enTEWCGLLIDTYDDRENALAFFVTPTGARLDmal------------snDIVGPNaf 197  Flavobacteria...
YP_002756473  120 DPd---pKDVRAHMVARDSlg---nDDKVTLFLDTFGDHRRAFVFQSNADGIQADal-------------ysEQNGYDy- 179  Acidobacteriu...
EFI78113      121 AKh---pELIRTHLARRENil---kDDFVTVNLDPFQDRQRGVMFQVNPSGVQADas-------------wtEANGYDy- 180  Acidobacteriu...
EAS46112       71 QPa---sVKRVNRQFARDAqi---eADRNIVSIDFDSTALAGYDFTVGSANSQQDgiv------------tpGDYSGD-- 130  gamma proteob...
EFQ20347      944 RHpalspEVPRTGGRRYDEpl--egWDRLQVAIDVNRDLDSSYVFEVDQRGKTRDr----------------CWDNHG-- 1003 Planctomyces ...
EDL56914      929 IEag--lDYPAAPDTGRTYdadlklQDRLSLAFDIDRDYTTFYQMEIDHRGWTSD-----------------RCWIDRs- 988  Planctomyces ...
Feature 1                                                            #                  
ADQ78478      151 --nWNAVWESKTRVTDKGWTVEMRIPFS--ELRFSEKSg-----sTWGLNMFRNIrryNSNNSWSFIDRK 211  Paludibacter propionici...
YP_002761589  185 dlaPDYVWRSKGQLTDFGFEVEITIPFK--SLRYRAGDq-----qTWQLNVVRTVqatGHEQTWTATRRS 247  Gemmatimonas aurantiaca...
YP_003270520  173 fgsWDAVWDAATSPLPAGYQMEVRIPFR--ILRISRDSrn---elRIGFGVNSGAl--GQLDLWPRFSSE 235  Haliangium ochraceum DS...
EDM81928      164 --eWDAVWQVESQIEDDRFVLEYRIPFA--VLGLSGRAsttaegiTMGFDVSRDHarrNATYDWRLIVPP 229  Plesiocystis pacifica S...
EAR03028      198 nlsWNTFWDGASKITEEGWFAEIRIPFS--SLPFESVDgk----tIMGITTWRYLarnDETDIFPPRDLS 261  Flavobacteriales bacter...
YP_002756473  180 --sFDTVWDTWGRRTPYGFVVLMRIPFV--SLYFSKARpdq--lrRWGIILERDVasnGESDFWPRSRHD 243  Acidobacterium capsulat...
EFI78113      181 --sYDQVWDSDARITSKGYMALIALPFR--SLRFPPTGs------DWGAVFWRNIprnSENDFWPRVSAN 240  Acidobacterium sp. MP5A...
EAS46112      131 ---WDGTWYSQTSSNKDYWYSEIHIPWT--VAPMTDAGdg---rkKIALWFSRVVfdeSLRFAFPNAYYS 192  gamma proteobacterium H...
EFQ20347     1004 ---WNPTWHVASSGDGSHWRVELAIPLSelIGERPLARe-----eVWAISISRILp-gLGIQSWGEQLTT 1064 Planctomyces brasiliens...
EDL56914      989 ---WNPRWYVAREKDSQSWRTEIAIPLS--ELAPSTRLkr----sTWGLSVVRILp-aMGLQGWNHPLTV 1048 Planctomyces maris DSM ...

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