1AMU,3DHV,3FCC,3ITE,3VNQ,4D4G,4ZXH,5ES6,5T3D,4GR5


Conserved Protein Domain Family
A_NRPS

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cd05930: A_NRPS 
Click on image for an interactive view with Cn3D
The adenylation domain of nonribosomal peptide synthetases (NRPS)
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.
Statistics
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PSSM-Id: 341253
Aligned: 131 rows
Threshold Bit Score: 356.838
Created: 20-Jun-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
AMP bindingacyl-activating
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:AMP binding site [chemical binding site]
Evidence:
  • Structure:1AMU; Brevibacillus brevis adenylation domain of gramicidin synthetase 1 binds AMP and Mg++, contacts at 4A
  • Citation:PMID 9250661
  • Structure:3FCC: Bacillus cereus D-alanyl carrier protein ligase (DltA) binds ATP and Mg++; contacts at 4A.
  • Structure:3DHV; Bacillus cereus D-alanyl carrier protein ligase (DltA) binds D-alanine adenylate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
1AMU_A         53 PNNVAIVc--eNEQLTYHELNVKANQLARIFIEKGig------------kdTLVGIMmekSIDLFIGILAVLKAGGAYVP 118  Brevibacillus...
AAL33758      459 PLAVAVId--hGQQLSYAELWARAALVAANISQHVak------------prSIIAVAlprSAEFIAALLGVVRAGHAFLP 524  Pseudomonas f...
Q80WC9         82 PAAYAPId--pDSPPSLSTYFMKKCDLKYVLVEKQ----------------QLSKFKs--SHETVLNYDTVSVEHKDLAL 141  house mouse
YP_428191    1151 AARVALEa--gRTRWTYDVLGGQVAAIASQLQDLDlr------------pgDVVALHmaaGPLWVACLLATLVRGLSFLT 1216 Rhodospirillu...
BAE66348       21 ATSVAIRd--dECHLSYAQLHAKALNLVYQIRCLQvq------------peVPIGILsprGINHVVSQIAVIYAGATCVP 86   Aspergillus o...
ABI22133      483 PDAVALWq--gDTRVTYAQLWADATRLADELAARGvr------------pgDRVAVWlrrGPSTVTALLAVLAAGAAFVP 548  Streptomyces ...
XP_006576398  107 PHLITVQsr-gNVSVNCEEGTVQTPESLETVMPSEgvmnes----sreyrpKIVGIYmppSVEYVVAVLSVLRCGEAFLP 181  soybean
E2JA29         24 GNRLAVQd--dNGSLTFADFVEKVGILSAKLRLVIkr-------------gEHVAVQlprGINYIVAAYAIWEAGGVYLP 88   Pantoea agglo...
NP_001330867   44 SESAAPPvydgDKCFTFAELSSSIDSLTSRLHRILsnddsqvagsdvvympKVVALYmppSVEYVISVFSVLRCGEAFLP 123  thale cress
Q6TNA5         23 PNAIAVVh--eGKPVTYQQLQTQVLERSEALIRQGla------------dhPYMPLManrCLEYLITMLACCKLGITYVS 88   Pseudomonas s...
Feature 1                                                                                         
1AMU_A        119 IDIEYPkERIQYILDDs-qARMLLTQkhlvhlihniqfngqveif---------------eedtikiregtnlhvpskST 182  Brevibacillus...
AAL33758      525 IDPRLPtDRIQFLIENs-gCELVITSdqqsvegwpqvarirm--------------------ealdpdirwvaptglsHS 583  Pseudomonas f...
Q80WC9        142 FRLHWEdGRVSTVLGDr-aDQHKVTDredrvsaesrt-------------------------------pekehmdmrhDG 189  house mouse
YP_428191    1217 LDPSHPaERNHALLEGa-rAKVVMAApglpplaelptlvpadp------------------dartpalstllvalsevDA 1277 Rhodospirillu...
BAE66348       87 LDVNHPvQYLANLLRNl-dISILLTDkanshrleahgfsqivvdhr-------------smltlvceelgydvidlqpSQ 152  Aspergillus o...
ABI22133      549 VDAAYPeERVRYLLSDs-rPSLVVTEssvhllgelglptlllde----------------lsgapaavdgarrpdrvaAD 611  Streptomyces ...
XP_006576398  182 LDPIWPnERILSVAYSs-nVDLIIGSqssfgksnldkldeshwlvksiscpvlnysideniqvcsgptdltwpcanekRR 260  soybean
E2JA29         89 LDNQWPsSRIEGILHRs-hVRVLIHTsqadqglelte------------------------------lpaetraespvAG 137  Pantoea agglo...
NP_001330867  124 LDPSWPrERVLSLISSs-nISLVIACglssveshwlvernvcpvllfs--------mdeklsvetgcssfvwpckkerQR 194  thale cress
Q6TNA5         89 IEPSTPsKRLIAVLEQlgcNHLLLLGqptdlrpdptltcfrlddc--------------gtlcsdgpalrqpirrrldDA 154  Pseudomonas s...
Feature 1                ##                                                                       
1AMU_A        183 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENslnv---tekDRIGQFASis-fDASVWEMFMALLtGASLYIILkdt 258  Brevibacillus...
AAL33758      584 DAAYLIYTSGSTGVPKGVVVEHRQVVNNILWRQRtwpl---taqDNVLHNHSfs-fDPSVWALFWPLLtGGTIVLADvrt 659  Pseudomonas f...
Q80WC9        190 CLAYVLHTSGTTGTPKIVRVPHACILPNIQHFRSlfd----itqEDILFLASpltfDPSVVEIFVSLSsGACLLIVPtsv 265  house mouse
YP_428191    1278 TPAYVIFTSGSTGKPKGVVVAQGGLRDRLLWKIEaldl---gpgERVLQSMQti-fDPALWETLAPLLaGSTLVIADpev 1353 Rhodospirillu...
BAE66348      153 YRSHIFHTSGSTGRPKPVQVLARGIINYCLNETFvpv----hegQQFGHLSNvt-fDVSIMETLGSFLrGATAVVLDrdt 227  Aspergillus o...
ABI22133      612 TPAYLIYTSGTTGRPKGVVVRHSSVVNNIAWRQAnwql---tedDRVLHNHSfc-fDPSVWAAFWPLAtGAAIVLATeeq 687  Streptomyces ...
XP_006576398  261 SFSYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGmypl---ngqELLLFNSSvs-fIDHLQEFLSAIL-TACVLVIPpfn 335  soybean
E2JA29        138 TPAYIIHTSGTTGEPKGVVVSHESLIHLVESHQRdiyqaydvteGPVAINASfc-fDSALERMALVAL-GYSLHVVSdqv 215  Pantoea agglo...
NP_001330867  195 KFCYLMYTSGSTGKPKGVCGTEQGLLNRFLWMQElypv---vgeQRFAFKTSvg-fIDHIQEFLGAILsSTALVIPPftl 270  thale cress
Q6TNA5        155 SVITVMFTSGTTGVPKGVRISQDGLLNLVDNVQQqvq----gkpRSYVHHSSig-fDAALFEVWVPLLtGACVTLQPsef 229  Pseudomonas s...
Feature 1                                                                ##                     ##
1AMU_A        259 in--dfvkFEQYINQk-eITVITLPPTYVVHldpe---------rilSIQTLITAGSa-tSPSLVNKWke---kvTYINA 322  Brevibacillus...
AAL33758      660 me--dstaLLDLMIRh-dVSVLGGVPSLLGTlidhpf-----andcrAVKLVLSGGEv-lNPELAHKIqkv-wqaDVANL 729  Pseudomonas f...
Q80WC9        266 kv--lpskLADILFSrhrVTVLQATPTLLRRfgseliks-tvlsahtSLRVLALGGEafpSLTILKSWrgkgnrtQIFNI 342  house mouse
YP_428191    1354 rs--sprrLAETLLSa-kITVATCISGMVGPlgqalagl-ggkgddlALRRIVAGGEa-lPNAVARAFveq-tgaRIEHF 1427 Rhodospirillu...
BAE66348      228 vl--dparLVKRIREd-kIDVLWQTPALLATtinay------pqayiTVDTLLTGGEv-vTAQLARKVliygppkRLLNL 297  Aspergillus o...
ABI22133      688 mk--dpgeMITTLRDh-qVTVLGGVPSLLSLlldhrd-----agtctRVRLVLSGGEp-lTDTLLESVest-wsaEVANL 757  Streptomyces ...
XP_006576398  336 elkeniysIIDFLQAy-fVNRLTTVPSLMRTilpglqth-anmlvenSLKLLVLSGEt-fPLTLWEMLstilpktSILNL 412  soybean
E2JA29        216 rk--spyeLVKYLRDn-sIVNVDLVPSHLKVllsagl-----nekcdALRLVIVGGEa-iDAELWREIvqn--qaIYINV 284  Pantoea agglo...
NP_001330867  271 lk-enmisIIDFLEEy-sISRLLAVPSMIRAilptlqhrghnnklqsCLKLVVLSGEp-fPVSLWDSLhsllpetCFLNL 347  thale cress
Q6TNA5        230 n----idaLDHCVRAa-sCDVLLLTTSLFHLvaqhr------lsmleAVRVLYVGGEv-lKPVHARALllanpriTLVNG 297  Pseudomonas s...
Feature 1         ####                           #                                                
1AMU_A        323 YGPTETTicATTWVAtket------ighsVPIGAPIq-nTQIYIVDenlqlksvgeaGELCIGGegLARGYWKRPELTSQ 395  Brevibacillus...
AAL33758      730 YGPTEATidALYFSIdkna-------agaIPIGYPId-nTDAYIVDlnlnpvppgvpGEIMLAGqnLARGYLGKPAQTAQ 801  Pseudomonas f...
Q80WC9        343 YGITEVSswATFYRIpeeilnsavkhespVQLGSPLl-gTVIEVRDqngsp-vlegtGQVFLGG--KNRVCFLDDEMTVP 418  house mouse
YP_428191    1428 YGPTEATifCTHQGVgpadtl---pedgiLPIGRPVa-gARVAIVDltgapcppgviGMVDLSGigLALGYLGADGAVIG 1503 Rhodospirillu...
BAE66348      298 YGPTECTmfSTFHNIsmddv-----ergnISIGKPMd-gYEVIVVNdnldvllhgevGELVIGGkgVAGGYLSESKKPGN 371  Aspergillus o...
ABI22133      758 YGPTEATidATGHRVprgd------rtvpVPIGRAVs-nTAVHVVDaelrpvpegvpGEIVVTGagVAVGYHDRPALTAA 830  Streptomyces ...
XP_006576398  413 YGSTEVSgdCTYFDCkrmplilkeeklfsVPIGLPItncDVMMLLNenga----sneGELYVGGscIFRDYYNEPNNIMS 488  soybean
E2JA29        285 YGPTENTinTSFCEIrg----------etPHIGRPFk-nVTCLLLNengercaageeGELLVAGrhLAQGYYNAPDLTDR 353  Pantoea agglo...
NP_001330867  348 YGSTEVSgdCTYFDCselprllkteeigsVPIGKSIs-nCKVVLLGdedk----pyeGEICVSGlcLSQGYMHSSIESEG 422  thale cress
Q6TNA5        298 YGPTENTvfSTWYSLnkped----aerdvIPIGQFLh-qVHGKIVDaklqevevgtpGELLLTGanLALGYLDEALTPTR 372  Pseudomonas s...
Feature 1                                   #           #  #                                      
1AMU_A        396 KFvdnpf---------vpgeKLYKTGDQARWLsdGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMyiSETAVSVHKdh 466  Brevibacillus...
AAL33758      802 RFlpnp----------fgngRVYATGDLGRRWssGAISYLGRRDQQVKIRGHRIELNEVAHLLCQALelKEAIVFAQHag 871  Pseudomonas f...
Q80WC9        419 LG------------------TMRATGDFVTVKd-GEIFFLGRKDSQIKRHGKRLNIALVQQVAEELRqvESCAVTWYNq- 478  house mouse
YP_428191    1504 TGggfrq---------hgesRVYASGDLGRWRsdGRIEVLGRQDTQVKIRGVRIDLAEVEAVLLAHSlvGEAAVIAAKra 1574 Rhodospirillu...
BAE66348      372 AFiqlgh--------fcpnqQVYRTGDLGRWNsaGLLEFVGRRDNQVKIRGHRIELEAVEAILMATGlvSAAAAVKIDvd 443  Aspergillus o...
ABI22133      831 RFlpapfad----asddpgaTLYRTGDLGRRLpdGSVQFFGRVDDQVKIRGHRVEVSEVESVLKALAgvQDAAVVALDag 906  Streptomyces ...
XP_006576398  489 DAfaklprs-----yacqgqLYFRTGDLVKQLpsGDFVFLGRKDRIIKINGQRIALEEVEELLREHPyiNDAAVVCRNne 563  soybean
E2JA29        354 VFvhi------------dgiRYYRTGDRVRQNeqGNLLYLGRIDDQVKINGFRIELADVQHNLTQLPgvKYAAVTPIKlp 421  Pantoea agglo...
NP_001330867  423 YVklhnnslcnhltndcgsqLYYRTGDYGRQLssGDLIFIGRRDRTVKLNGKRMALEEIETTLELNPdiAEAVVLLSRde 502  thale cress
Q6TNA5        373 FLqlp-------------egTYYRTGDYVIQDehGMLFYQGRIDEQVKIKGFRVEIAEVEHALTQLPgvAQAVVQAHVmn 439  Pseudomonas s...
Feature 1                                                                   #      
1AMU_A        467 q---eqPYLCAYFVSek-----hiPLEQLRQFSSEelPTYMIPSYFIQLDkMPLTSNGKIDRKQL 523  Brevibacillus brevis
AAL33758      872 t---eqARLVAAIEQqp-----glHSEGIKQELLRhlPAYLIPSQLLLLDeLPRTATGKVDMLKL 928  Pseudomonas fluorescens
Q80WC9        479 ------ERLILFIVSkv-----dlVKDCIFKELQKhlPAHALPDDMVLIDtLPFTCHGKVDVSEL 532  house mouse
YP_428191    1575 ----gvSTLHAFVTGdq-----diDSEALRKDLAGrlPPAMRPTTLRAVSgLPRLANGKIDRAAL 1630 Rhodospirillum rubrum ATCC 1...
BAE66348      444 snsdaeSILLACVVPise----dtNPLTIRQAYTKnaPYLMLPRLEVVGH-LPLTNTHKIDRRKL 503  Aspergillus oryzae
ABI22133      907 t---enARLAAALVLpags--dapSLEDVRSALAGelPDYLVPDRFAVVDeLPLTANGKTDRRGV 966  Streptomyces lavendulae
XP_006576398  564 a---elVLLEAFIILkkkersgelLIPAIRSWMINklPSIVLPNRFFFMEsFPVSPSGKVNYELL 625  soybean
E2JA29        422 ----tgQGLLASIVWnsda--peqTFSNLEALLGEklPSYMVPTRWQKLDaLPLTDNLKLDHKSL 480  Pantoea agglomerans
NP_001330867  503 t---elASLKAFVVLnkesnssdgIIFSIRNWMGGklPPVMIPNHFVLVEkLPLTSSGKVDYEAL 564  thale cress
Q6TNA5        440 d---leNSLHAFIVFrhgs--ptiEESKLMSLLGDrlPHYMVPRRIHYLAeLPLTANGKVDKRSL 499  Pseudomonas syringae group g...

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