Conserved Protein Domain Family
YhcR_OBF_like

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cd04486: YhcR_OBF_like 
YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Statistics
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PSSM-Id: 239932
Aligned: 97 rows
Threshold Bit Score: 51.1072
Created: 6-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
generic bindinggeneric binding
Feature 1:generic binding surface I
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ###          #### #      ### #                    #      ###      ###      
P54602                 187 TIKGIITADQNaigggkLSTFLQDet-gGINIYSPSPEQFpe---------lKEGMDVTVTGKITSYqglKEIVPNss-- 254  Baci...
REF_goetting:BLi00982  272 RMKGFIETKPDap--agGGYNITMi--dENYHPLTLRVMEqtna----aasiEQGQWYEITGILSRYd-sVQLLPRkqed 342  Baci...
NP_691420              334 QVNGYIRSIPDsp--agGGYNITVt--dADFNGTTLRVMEnald----isevEPNTWYDITAVVSQYn-tYQLIPTe--- 401  Ocea...
P54602                 291 KLTAFVSSIPSsp--agGGYNVTMi--dDDHHAMTLRVMNetgv----inelDEGKWYEFTGVLSRYq-tFQLLPRk--- 358  Baci...
AAP80580               181 TVSGKIISLVNgw--ggNGFYLQGsd-gAGIYIYPGAALGy-----------QLGDTVQLTGTLGEYkgeLQLTTVsn-- 244  Stre...
CAG68174               220 TVRGIITADYRysn-gfSGFYIQTp--dSQAKAGLSNAIFvyipassqikggEVGQEVILRGRLTTYqnqKQIDQLs--- 293  Acin...
ZP_01128520             52 TVVGTVTAVFMapr-alGGFFLQQ----GGMGGRPPEGIFvyqpqrggsanpAVGERVVLSARTGRYrgrIQLERVtr-- 124  Nitr...
ZP_01151280             57 RVNGVVTAAFLgae-glDGFFIQGtgpaPDGKPAGLFVYApeltae-qreriEPGRQLLLTGRAGEHrgrPQLEWLea-- 132  Halo...
BAB04734               850 VVEGVVTSTPGaw--gaKGFYVQDe---TGGLYVYQFDVEv-----------TVGDIVQVVGTMDEFngeLQVSNPss-- 911  Baci...
YP_742027               62 RVKGAVTGVFLddg-glDGFFIQGeg-pGDGLPSGVFVYApglape-emarvRAGRQLALRARTGRWqgqIQLQRVra-- 136  Alka...
Feature 1                         
P54602                 255 gIKINQS 261  Bacillus subtilis
REF_goetting:BLi00982  343 lRKLDGA 349  Bacillus licheniformis ATCC 14580
NP_691420              402 qADIQIA 408  Oceanobacillus iheyensis HTE831
P54602                 359 sADLKLL 365  Bacillus subtilis
AAP80580               245 hKAISEN 251  Streptococcus suis
CAG68174               294 -QDIKTC 299  Acinetobacter sp. ADP1
ZP_01128520            125 tLVCGPD 131  Nitrococcus mobilis Nb-231
ZP_01151280            133 vQDCGAK 139  Halorhodospira halophila SL1
BAB04734               912 iNIVGSG 918  Bacillus halodurans C-125
YP_742027              137 lNDCGEA 143  Alkalilimnicola ehrlichei MLHE-1

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