2BMU,1YBD,2BNE,1Z9D,2A1F


Conserved Protein Domain Family
AAK_UMPK-like

?
cd04239: AAK_UMPK-like 
Click on image for an interactive view with Cn3D
AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Statistics
?
PSSM-Id: 239772
Aligned: 77 rows
Threshold Bit Score: 155.388
Created: 28-Sep-2005
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
uridinenucleotide
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:uridine monophosphate binding site [chemical binding site]
Evidence:
  • Comment:UMP binding site for bacterial and archaeal UMPK but does not appear to be UMP binding site for Mo storage proteins (MosA and MosB).
  • Structure:2BMU; UMP kinase from Pyrococcus furiosus complexed with its substrate UMP and its substrate analog AMPpnp, showing contacts with UMP.
  • Structure:2BNE; E. coli UMP kinase in complex with UMP.
  • Comment:defined by 3.5 Angstrom contacts

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #                             
2BMU_B        3 RIVFDIGGSVLvpen--pdiDFIKEIAYqltkv------sedhEVAVVVGGGKLARk--yIEVAEKfns----------- 61  Pyrococcus furiosus
ZP_00676374  37 LNVVKIGGHGTidygrevvlPLMEEIGElsl----------ehKMLIVTGGGVRVRhildIGIDLGmp------------ 94  Pelobacter propi...
P84308       41 LQVVKIGGRVMdrga-dailPLVEELRKllp----------ehRLLILTGAGVRARhvfsVGLDLGlp------------ 97  Azotobacter vine...
P84253       38 ATVIKIGGQSVidrgraavyPLVDEIVAark----------nhKLLIGTGAGTRARhlysIAAGLGlp------------ 95  Azotobacter vine...
NP_946792    38 ATVIKIGGQSMidrgraavyPLVEEIVSark----------dhKLLIGTGAGTRARhlysIAAGLNlp------------ 95  Rhodopseudomonas...
CAG34874     44 VAVMKIGGQSIcdrgtkalpGVLKEIAAnra----------ehKMLLTTGGGTRSRhiytIGLEMGmp------------ 101 Desulfotalea psy...
ZP_00663988  44 VNVVKMGGQSItdrgaravlPLIKEIVEnar----------khKMIISTGGGTRSRhvyaIAMELGmp------------ 101 Syntrophomonas w...
ZP_00666742  77 INVVKIGGQSIidrgatavlPIVDVLVQake----------qyKIILMTGGGSRARhvysIGIDLGmp------------ 134 Syntrophobacter ...
AAC65094      2 VTVLSLGGSIVap-----etPDIELLGRfvrsvqrylyedasrKLIVVSGGGAPARt--yQNAYRAlrrslsspacakpa 74  Treponema pallid...
2688487       2 LEIISLGGGVInsnq--iniEFIKNFKNfvfkwl---lenekrKIILIVGGGRVARe--yQDAYKKinpd---------- 64  Borrelia burgdor...
Feature 1                           #  #                                                        
2BMU_B       62 ---------------setFKDFIGIQITRANAXLLIAALre--kAYPvvvedfwEAWKAVQlkKIPVXGgt--------- 115 Pyrococcus furiosus
ZP_00676374  95 ----------------tgVLAELAAKISEQNAEIVTLLLskwhgSRVkpg-dllDLPTMLHlgLLPVIHgtppyglyehp 157 Pelobacter propi...
P84308       98 ----------------vgSLAPLAASEAGQNGHILAAMLasegvSYVehptvadQLAIHLSatRAVVGSafppyhhh--e 159 Azotobacter vine...
P84253       96 ----------------agVLAQLGSSVADQNAAMLGQLLakhgiPVVgga-glsAVPLSLAevNAVVFSgmppyklwmrp 158 Azotobacter vine...
NP_946792    96 ----------------agVLSQLGASVASQNAEMLGQLLakhgiSSVgda-glsAVPLYLKevNAVVFSgmppyglwmrp 158 Rhodopseudomonas...
CAG34874    102 ----------------tgVIAKFGSMVSEQNALMVATLLspwggTQIshs-divKLPTYFKdgIIPVMAgmppydyfaik 164 Desulfotalea psy...
ZP_00663988 102 ----------------tgIISKLGQSVSEQNSLMISTLLspyggIKVghd-dipKLAAFFMqgCIPVIHgmppygywehl 164 Syntrophomonas w...
ZP_00666742 135 ----------------tgVLSKLGDKVSWQNAEMMSVLLnkhggVKIghgdnleQLTMFCRrgYLPITYgippygffehp 198 Syntrophobacter ...
AAC65094     75 hegdnqedrelyataehvELDWIGIMATRLNAQLLKSLFg----ILCpnpvvydPTAANVFsgQVLVAAgw--------- 141 Treponema pallid...
2688487      65 --------------fkvhELDEIGIISTRLNAEFLSKVMn----PFCkdkivtnPLKNFSFkgKILIASgw--------- 117 Borrelia burgdor...
Feature 1             # ###  #                                                                  
2BMU_B      116 -----hPGHTTDAVAALLAEFLKADlLVVITNVDGVYTADPKkd-----ptAKKIKKXKPEELLEIvgkgiekagsssvI 185 Pyrococcus furiosus
ZP_00676374 158 aeygliPPHRTDTGALLMAEVLGAKnCILVKNVDGLYTEDPRin-----pkAELIEDITVAELLKLdme-------dlvL 225 Pelobacter propi...
P84308      160 fpgsriPPHRADTGAFLLADAFGAAgLTIVENVDGIYTADPNgpd---rgqARFLPETSATDLAKSegp--------lpV 228 Azotobacter vine...
P84253      159 aaegviPPYRTDAGCFLLAEQFGCKqMIFVKDEDGLYTANPKts-----kdATFIPRISVDEMKAKglh-------dsiL 226 Azotobacter vine...
NP_946792   159 spdgviPPYRTDAGCYLMAEQFGCKaMIYVKDENGLYTENPKts-----knATFIPKISVDEMKAKglh-------dsiL 226 Rhodopseudomonas...
CAG34874    165 pkvgriPIHRTDVGLIILADLIGSRnILFIKDENGLYTDDPKkn-----pkADFIGEIGAQDLLDSgqd-------dlvI 232 Desulfotalea psy...
ZP_00663988 165 pregriPPNRTDVGAYLLAEVIGARqCIFIKDEEGLFSDNPKvn-----kqAEFIPRIGAQELLNKdle-------dlvV 232 Syntrophomonas w...
ZP_00666742 199 aeigsiPPHRTDCGAFLLAENIGARsLIYLKDERGLFSNDPKkvakaerkkLRFFDRISARELLELdld-------dliI 271 Syntrophobacter ...
AAC65094    142 -----kPGFSTDTDAVLLAERYSAKtVINLSDVAHVYTGDPRsd-----kdAKALTSLSWDDFLLLvdkewv-pgshvpF 210 Treponema pallid...
2688487     118 -----kSGFSTDYIAVKFAEKFNKKdIINITNVNQVYDKDPKkf-----knATAFKKLNWKQLQNIvgqkwn-pglnlpF 186 Borrelia burgdor...
Feature 1                                                    
2BMU_B      186 DPLAAKIIARSg--iKTIVIGked-akdLFRVIKgd--hnGTTIE 225 Pyrococcus furiosus
ZP_00676374 226 ERKMLNLLPDMinvkEIKIVNghk-rgnIGRAIRge--kvGTVIR 267 Pelobacter propionicus DSM 2379
P84308      229 DRALLDVMATArhieRVQVVNglv-pgrLTAALRge--hvGTLIR 270 Azotobacter vinelandii
P84253      227 EFPVLDLLQSAqhvrEVQVVNglv-pgnLTRALAge--hvGTIIT 268 Azotobacter vinelandii
NP_946792   227 EFPVLDLLKSArhvrEVQVVNglv-pgnLTRALAge--hvGTIIT 268 Rhodopseudomonas palustris CGA009
CAG34874    233 ERPCLEIIQNSevidKVQIINgtv-pgnITRALAge--hvGTYIH 274 Desulfotalea psychrophila LSv54
ZP_00663988 233 ERAVLEMLVRSqsvkEIQIINglk-egnLSRALNge--hiGTIIY 274 Syntrophomonas wolfei str. Goettingen
ZP_00666742 272 ERPILTLLQRAkclkELQIIDalhhpehILDALEgk--hvGTIIY 314 Syntrophobacter fumaroxidans MPOB
AAC65094    211 DPVASVRAKKSg--iQVICATgrd-lpnLERILNrqe-fvGTTIG 251 Treponema pallidum subsp. pallidum str. Nichols
2688487     187 DPIATKLSSKLg--lTLYIVNgnn-ienLEKVFNknndffGTIIV 228 Borrelia burgdorferi B31

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap