Taxonomy browser Taxonomy Browser (Treponema pallidum subsp. pallidum str. Nichols)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	9	9	-
BioSample	663	663	-
Gene	3,240	3,240	-
Identical Protein Groups	1,909	1,909	-
Nucleotide	118	118	110
Protein	4,366	4,366	-
SRA	1,192	1,192	-
Structure	24	24	-
Taxonomy	1	1	-

Treponema pallidum subsp. pallidum str. Nichols

Taxonomy ID: 243276 (for references in articles please use ncbitaxon:243276)

current name

Treponema pallidum subsp. pallidum str. Nichols

equivalent:

Treponema pallidum Nichols

NCBI BLAST name: spirochetes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage(full): cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum

Comments and References:

genome sequence

Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Fraser CM et al. (1998)

Fraser, C.M., Norri,s .S.J, Weinstock, G.M., White, O., Sutton, G.G., Dodson, R., Gwinn, M., Hickey, E.K., Clayton, R., Ketchum, K.A., Sodergren, E., Hardham, J.M., McLeod, M.P., Salzberg, S., Peterson, J., Khalak, H., Richardson, D., Howell, J.K., Chidambaram, M., Utterback, T., McDonald, L., Artiach, P., Bowman, C., Cotton, M.D., Fujii, C., Garland, S., Hatch, B., Horst, K., Roberts, K., Sandusky, M., Weidman, J., Smith, H.O., and Venter, J.C. "Complete genome sequence of Treponema pallidum, the syphilis spirochete." Science (1998) 281:375-388.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Treponema pallidum Nichols	organism-specific	BioCyc
Treponema pallidum Nichols	organism-specific	BioCyc
Treponema pallidum Nichols	organism-specific	BioCyc
GOLD: Go0000773	organism-specific	Genomes On Line Database
637000328: Treponema pallidum pallidum Nichols	organism-specific	Integrated Microbial Genomes
2554235312: Treponema pallidum pallidum Nichols	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.