Conserved Protein Domain Family
ICDH_alpha

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TIGR02924: ICDH_alpha 
isocitrate dehydrogenase
This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear. [Energy metabolism, TCA cycle]
Statistics
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PSSM-Id: 274353
Aligned: 6 rows
Threshold Bit Score: 827.863
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
mpdneb:Wbm0367   3 TPITVAYGDGIGPEIMEAVLSMLREAEAKISIDVIEIGERVYNKEWSYGISPSGWESIERTKVLLKSPTTTSQGKGHKSL 82  Wolbachia end...
cnrs:RF1015     13 TPITIAYGDGIGPEIMEAVLYILRKAEARIRLETIEVGEKLYKKHYTSGISEESWESIQRTGIILKAPITTPQGGGYKSL 92  Rickettsia fe...
CAF24507         7 IPITVAEGDGIGPEIMDATLRILKAAGAPLDIKNVEIGEKVYLSGQPTGIENSTWDLIRQSKALLKAPITTPQGGGFKSL 86  Candidatus Pr...
WP_006011301     3 IPITVAYGDGIGPEIMEAVLLILSEAESGLVVETIEVGHNLYKKEWSSGIAPSSWDSIYRTKVLLKSPTMTPQGRGHKSL 82  Ehrlichia cha...
WP_011451212     3 VPITVAYGDGIGPEIMEAVLLILKEAQADIAVETAEIGHAQYKRDWPCGIAPSSWASIRRTKVLLKSPTMTPQGGGHKSL 82  Anaplasma pha...
WP_011451573     2 PKLTVAYGDGVGPEIMTSVLEIIFEAGAEIQIDTIEIGQKIYEKGWHSGISDSGWETLKRNKVLLKAPITTPRGGGVRSL 81  Neorickettsia...
mpdneb:Wbm0367  83 NVALRKSLGLYANIRPCTSYHPVIENKFDRFDIVVIRENEEDVYTGIEHRLTGNSYQCTKIITRSGSEKICRYAFNYAKR 162 Wolbachia end...
cnrs:RF1015     93 NVTIRKTLQLFANIRPSVSFHPFTMTLHPHLNLTIIRENEEDLYAGIEYRQTHNMYESIKLISHTGCEKIIRYAFEYAVK 172 Rickettsia fe...
CAF24507        87 NVTIRTTLGLYANVRPCVAYYPFVETKYPGMNVVIVRENEEDLYTGIEYRQTPDVYEALKLITRPGCEKIIRYAFEYAQI 166 Candidatus Pr...
WP_006011301    83 NVTLRKRLGLYANIRPCISYHPVIKTRYPNLNVVIVRENEEDTYTGIEHRLTNDTYQCSKVITRSGSERICDYAFHYAKV 162 Ehrlichia cha...
WP_011451212    83 NVALRKSLGLYANVRPCVTYSPIIDTGSTNLDIVVVRENEEDTYCGVEYRISQDASVCDKITTRSASERLCAYAFRYARS 162 Anaplasma pha...
WP_011451573    82 NVTLRKKLGLFANIRPCKSH---LEWQSPKMDIVIIRENEEDLYSGTEYRQTLDTYNCTKVITESTSERICRYAFEYARK 158 Neorickettsia...
mpdneb:Wbm0367 163 HNRKKVTCLTKDNIMKMTDGIFHTAFDSIAKEYPDIKAEHYIVDIGMARVATEPENFDVIVTENLYGDILSDIVAQTSGS 242 Wolbachia end...
cnrs:RF1015    173 NNRKKVTCLSKDNIMKFSDGVFHKIFNEIAKEYPQINNEHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGS 252 Rickettsia fe...
CAF24507       167 YHRKKVTCFTKDNILKLTDGLFHKIFDEIGAEYPQIEKEHWIVDIGAAKLADTPTAFDVIVMPNLYGDILSDVAAQIAGS 246 Candidatus Pr...
WP_006011301   163 HNRKRVTCLIKDNIMKMTDGIFHKSFSKIAENYPDIESDHYIVDIGMAKVASNPENFDVIVTTNLYGDIVSDIVAELSGS 242 Ehrlichia cha...
WP_011451212   163 HNRKRVTCLIKDNIMKMTDGTFRSAFQKIAAMYPDISSEYCIVDIGMARIAAHPEEYDVVVTPNLYGDILSDVVAVASGS 242 Anaplasma pha...
WP_011451573   159 NGRKKVTVMVKDNIMKLTDGIFHKLFKKVALEYPDIESENYIIDIGAARIAKNPEKFDVIVTLNLYGDIISDIAAEISGS 238 Neorickettsia...
mpdneb:Wbm0367 243 VGLAGSSNIGSEYAMFEAVHGSAPNIAGKNIANPSGLLNAAVHMLIYIGQADVAKLVHDAWLKTLEDGIHTADLYKEKKS 322 Wolbachia end...
cnrs:RF1015    253 VGLAGSANIGQHYAMFEAVHGSAPDIAGKDIANPSGLLNAAIMMLVHIGQGDIASLIENAWKKTIEDGVHTADIYNEQNS 332 Rickettsia fe...
CAF24507       247 VGLAGSANIGNSGAMFEAIHGSAPRRAGQNLANPSGLLLAAIQMLVHLEQSNLAELIHNAWLKTLEEGIHTYDIFKEKTS 326 Candidatus Pr...
WP_006011301   243 IGLAGSANIGNNYAMFEAVHGSAPDIAGKNIANPSGLLNAAIQMLMYLKQFDKAQLIYNAFLKTLEDGIHTADIYQSQVS 322 Ehrlichia cha...
WP_011451212   243 IGLSGSANLGEEYAMFEAVHGSAPDIAGQNIANPSGLLNAAVQMLVHIGQESTAQAIYNAFLKTLEDGVHTADIYNAKTS 322 Anaplasma pha...
WP_011451573   239 VGLGGSINIGEEYAMFEAVHGSAPDIADQDIANPSGLLNAAMYMLSYIGQKEIAQKVYSAWLKTLKSGVHTADIFNPLHS 318 Neorickettsia...
mpdneb:Wbm0367 323 KQKVGTKEFAEAVIDNIGKKPGILPELIISn-gVSSKISKIQGnCEQDYKVRKLVGSDITLAWDKSSn-FNQIVKLFESS 400 Wolbachia end...
cnrs:RF1015    333 SKKVGTKEFAEEVTKRLGQIPTKLPKADYPl-iAEKQESNIDY-KIDTNEVKKLVGTDIFVNMNISS--AHDIADKINKL 408 Rickettsia fe...
CAF24507       327 KQKVGTKEFANAVTARLGKKPETLPAAHYS---TSFHIKHSNFsSLKNFK-QELYGIDIFIKWSEd---VETLATLLQST 399 Candidatus Pr...
WP_006011301   323 KKKVSTMDFAKAVVENFGQSPSQLPKSMFQ---DNVDRTGVSYtYEPSYVTRVLVGVDITIGCDGVGldFKQLINNLQNI 399 Ehrlichia cha...
WP_011451212   323 SSRASTTEFAQAVVNNLGTSPKYLRSMLI----NKNTEEAMHYeRVQDTSKKVLVGADVTIHWSGGDg-LNELVQSLAAA 397 Anaplasma pha...
WP_011451573   319 KLKVGTKKFTEHIIHNIDR------KSLVAfscNSLVEGVLLKpRYQSKKEKVLIGVDLFISWDSTNl-AALLAAL-EKI 390 Neorickettsia...
mpdneb:Wbm0367 401 N----PKVIAIYSKGLAIWPGD--S--KSLSDQVTCRFIANNE-KkTITNIDVNNLLIKLERNSFDVVRMDKLYLYDEKE 471 Wolbachia end...
cnrs:RF1015    409 Dlg-nIELKTISSKGLKLWPRD--TrfETISDHWCCRFMNKDG-T-EIKHLDITRLLEALSKANIDFIKVENLFEFDGVA 483 Rickettsia fe...
CAF24507       400 Snh-dLKLKMINNRGVKVWPNK--MpeTACIDNWRCRFISSTN-K-IVSQEQILNLLNRLVQKKLTLTQTAYLFAFDGQA 474 Candidatus Pr...
WP_006011301   400 Thd-kLELVLIHNKGLEIWPDEsvSvnLSYMDQVCCRFYMKSKdD-KIMNEHINQLLFDIEQKKIDVVKMEKLYLYNDQP 477 Ehrlichia cha...
WP_011451212   398 Lpp-sVKLRLIHAKGLELWPNA--PcvCSYIDLLTCRFVYDAQ-E-GADSTSISQLLLCLEGLGLDVVKLVKLYTFDGVE 472 Anaplasma pha...
WP_011451573   391 KvddvIILGSISVKGVLIWPEE--TavMPYSDTLCCRFLAEPN-K-SLATTVICGLISELENSAIEVTKMEKLYSFGDEA 466 Neorickettsia...
mpdneb:Wbm0367 472 GF 473 Wolbachia endosymbiont strain TRS of Brugia malayi
cnrs:RF1015    484 GY 485 Rickettsia felis URRWXCal2
CAF24507       475 GY 476 Candidatus Protochlamydia amoebophila UWE25
WP_006011301   478 GF 479 Ehrlichia chaffeensis
WP_011451212   473 GF 474 Anaplasma phagocytophilum
WP_011451573   467 GF 468 Neorickettsia sennetsu
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