Conserved Protein Domain Family
aProt_lowcomp

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TIGR02302: aProt_lowcomp 
TIGR02302 family protein
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Statistics
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PSSM-Id: 274073
Aligned: 3 rows
Threshold Bit Score: 1131.62
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
tigr:BR1984  30 LRRLHLRtfLSIAIERLWPLVLPLILLLALFASLGWLGLFALMPRWLHMGVLAVFSLAGLVALYLPFRFRSPREEEIVAR 109 Brucella suis 1330
CAC47229     21 AKRFLAR--SVLLAEELLPRMLVPASLVLLFLSAGWVGLFRAAPFWLHAALLLLFVVGLFVSLLPLTRIRWPETPEADRM 98  Sinorhizobium me...
CAE30179     23 LDKAIGRatLAIAWERAWPHLARVMSVVGLFLALSWAGLWLALPFSARIAGLVLLAALALAALIPAIGFRWPSRDEALAR 102 Rhodopseudomonas...
tigr:BR1984 110 IEAVNGLVHEPLAVQTGtmATGTHDPFAIALWREHQKRMAERLKNLQSGLPRPRVPERDPFGLRAGVALLFVTAFAYSLG 189 Brucella suis 1330
CAC47229     99 LEERNRLPHQAIRVQDD--APATEGAFGAALWREHQARMARMVRELDTGLPRPDIARHDPWALRAIPVLLACIAFAYSYS 176 Sinorhizobium me...
CAE30179    103 LDRNTGLKHRPATALGD--TLASGDPVARALWQAQRDRTLATIRGLKPGLPSPRLPIHDPWGLRALVVILLVATFFAAGE 180 Rhodopseudomonas...
tigr:BR1984 190 STSGRIADAFNlPPAKGSAVA--RIDAWVTPPRYTGRAPIFLTAGSENRK--------AADPITVPQGSIVSVRVIGgS- 258 Brucella suis 1330
CAC47229    177 NRAGLISDAFR-LPEQEVTAAdiRIDAWVTPPAYTGRAPIFLTGRQDATDpaqekdpqEKAQITIPQFSDLTVRITG-Ag 254 Sinorhizobium me...
CAE30179    181 ERSARVMAAFDwKGAMSPSTV--RVDAWVTPPVYTNKPPIILTAASNKDLgt-----pGSGPLPVPVGSTLLVRSSGgD- 252 Rhodopseudomonas...
tigr:BR1984 259 -AERLTATDAEGKRREIKPVAARQG------EKAEEGPIDSSVDGS----RNFRYDLQKDETLAL-SGIDa-rWKFVVTP 325 Brucella suis 1330
CAC47229    255 tEETVSYAEAGNEPLAIPPSDAKAEatsrpeTAKPETPRSETPQATpnavRNHVYKIAKDGTLSV-GGQS---WSFKITP 330 Sinorhizobium me...
CAE30179    253 -----LDIAVGGGVVEVKPD-------------------SDAPKGT----SERHFRITGDGTARVrAPSSeapWSFTATP 304 Rhodopseudomonas...
tigr:BR1984 326 DNPPTIRFTKEPERALNGTLQLSYEIDDDYGAAKAEAEIVALDTgdEEEEADP------LYDAPRLPLALPRRG--SREA 397 Brucella suis 1330
CAC47229    331 DSVPGIAFDGAPRPTVNAALDISYLAHDDYGIAQAWAEIKPLEE--PAKDAHP------LYAPPEYRLDLPRRNarEAKG 402 Sinorhizobium me...
CAE30179    305 DKPPAIALAKEPQRQARGSLQLSYKLEDDYGVTEAEAQFVAAPPa-KAPGAKPgdaprpLFEAPQFKLVLPNARtrVGVG 383 Rhodopseudomonas...
tigr:BR1984 398 STSKDLTEHPWAGQKVALTLVVTDAAGHTGHSETRIITLPERPFSNPLARAVAEQRRILALDATQRDHVLDMLSAIMLRP 477 Brucella suis 1330
CAC47229    403 TTSRNLSEHPLAGKRVSVTLVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLYP 482 Sinorhizobium me...
CAE30179    384 QTVKDFSEDPYAGAEVTLTLTAKDEASNQGHSEPFTMRLPERLFTKPLARALIEQRRILALDANANSQVYAALDALLIAP 463 Rhodopseudomonas...
tigr:BR1984 478 EETIRNAAHYLGLATIRTRLRIAASDNALRDTADYMWQVALGIENGNLSAAERRLRQAQEALRNALQNGASQEEIEKLTA 557 Brucella suis 1330
CAC47229    483 EETIPNATHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQQALSDALERNASDEEIARLMD 562 Sinorhizobium me...
CAE30179    464 EVFTPDAGQYLGLYTIADQLERARTDDALREVVGNLWSLAVSIEDGDASDAEKALRAAQDALKDALERGASDDEIKQLTD 543 Rhodopseudomonas...
tigr:BR1984 558 DLRKAMQDFLREFAQRQQQNPNARRQAPDPNarMLTEKDLQRMMDQIENLARQGSRDQATQLLSQLQNLMNNLQMGqaQQ 637 Brucella suis 1330
CAC47229    563 ELRRAMQEYMQALAEQAAKNPAVAANPEMNN--VLRQQDLQKMMDQIENLARSGARDQARQMLSELQRMMNNLQAG--RM 638 Sinorhizobium me...
CAE30179    544 KLRAALDTYMRQLAQQLRNNPQQLARPLDPNtkVMRQQDLENMIQRMERLSRSGDKEAAKQLLDQLAQMLENLQMAqpGQ 623 Rhodopseudomonas...
tigr:BR1984 638 GQGNGQgkgqgQQGQIQEQMNKLGELMRRQQETVNETFDLDQKMQR-QFGGSD----GEGEFGDGlMPGDDGS---ADAD 709 Brucella suis 1330
CAC47229    639 QQQMGE-----QNNAMRQQMDKLGELMQQQQQLMDETFKLDQALRDrMQRGDPlegeDEELFGQD-MPQEPGQrgdPNGQ 712 Sinorhizobium me...
CAE30179    624 G---GD------SGDMEQALNELGDMIRKQQQLRDKTYKQGQDQRRdRMRGQD----GEQNLGD---LQQDQQ------- 680 Rhodopseudomonas...
tigr:BR1984 710 sGQNSQGDVPPDMAEAMRKLQQKQKDLQSDLQKLKDDLKGMGIEPGKDFSEAEKSMGNATDALGRNEGSEANDQQGNALD 789 Brucella suis 1330
CAC47229    713 -PNPMDDMTAEQLKEALKLLREQQESLGKQLGDLQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQAVGSQGRALQ 791 Sinorhizobium me...
CAE30179    681 --NLHDRLRKLQQELAKRGLGQSPGGEKGEKGQQGQ--Q--GQQGEGGLDQADSAMGDAEGRLGDGNADGAVDSQGRALE 754 Rhodopseudomonas...
tigr:BR1984 790 ALRRGGHDMMQKMQQAMgqEGQSQ--G----MK--GGKGRDPLGRQSGTDGTGFGNNVKIPGEIDIQRAREILDEIRRKL 861 Brucella suis 1330
CAC47229    792 ALREGAQDMMNQMQAQG--QGQGPgqG----IPqyGQNGRDPLGRRQQNAGPDFGDQVKVPDEIDTQRARQILEEIRRKL 865 Sinorhizobium me...
CAE30179    755 ALRQGAQKLAEAMQQGDg-DGQGDgqGnrpgRQqsGANQTDPLGRPLRGRDLGDDLTVKIPGEIDVQRVRRILEELRRRL 833 Rhodopseudomonas...
tigr:BR1984 862 GNALTPQMEKEYLQRLLKFD 881 Brucella suis 1330
CAC47229    866 GDSLSPELERQYLERLLDMR 885 Sinorhizobium meliloti 1021
CAE30179    834 GDSARPQIELDYIERLLKDY 853 Rhodopseudomonas palustris CGA009
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