4NOI,3HKZ,6UPY,3H0G,5W64,6ZCA,1I6V


Conserved Protein Domain Family
RNA_pol_A_bac

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pfam01000: RNA_pol_A_bac 
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RNA polymerase Rpb3/RpoA insert domain
Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal
Statistics
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PSSM-Id: 425983
Aligned: 59 rows
Threshold Bit Score: 69.2046
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4NOI_B                         83 IHI--DG-------VAHEFDSXRGXLEDVALf-iINLKKLrfkI----------KGDSNkeIVEFSFKGSKE------IY 136 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819...
Q9YB53                         50 AYIfdNTtavydemVAHRLGLVVLDSNEAVE---KYRRPEecag-------kepSEEDCfvEVSLEAEVDAEgetgryIT 119 Aeropyrum pernix K1...
3HKZ_O                         44 VYFieNNsplydeiLAHRLALIPFMSEEALD---TYRWPEecie-------cteNCEKCytKIYIEAEAPNEpr---mIY 110 Saccharolobus solfataricus P2...
P39471                         44 VYFieNNsplydeiLAHRLALVPFVSDEALE---HYRPPEecae-------ckeNCDGCynRVYLDVEAKDQpl---mIY 110 Sulfolobus acidocaldarius DSM 639...
WGS:AAGF:cds.TTHERM_00193849A  47 VKVyeNTsslpdeyIAHRLGLIPLNSAKVDDy--NYIWNCnc----------qgECDRCtiHFDLRVSNFTNev--leVT 112
Q00813                         48 VRVieNTsvmfneqIGLRLGLVPLTTDLd------------------------dFEIGDevTLSLSVDGPST------AY 97  Haloarcula marismortui ATCC 43049...
Q9HQJ4                         49 VRFveNSsvmfdeqLGLRLGLVPLTTPEDYA-----------------------AGEAV--TLALDVEGPGT------AY 97  Halobacterium salinarum NRC-1...
O26144                         44 VNMyrNDakmfdevLAHRLGLVPLAADPEFAeslKMPEECdc----------eeYCSECsvSLTLRKKGPGV------VY 107 Methanothermobacter thermautotrophicus str. Delta H...
Q9V198                         45 VEFyeNDsalfdeiIAHRLAMIPLKTPVDRFeld------------------alELDDYtvTLSLEAEGPGI------VY 100 Pyrococcus abyssi GE5...
O28002                         46 VDIylNSsyfydevIAHRLAMLPIKTYLDRF------------NmqsecscggeGCPNCqiSFRLNVEGPKV------VY 107 Archaeoglobus fulgidus DSM 4304...
4NOI_B                        137 GKDLN-------NDQVEVV--------------NKDAYLATINEDAELKFTLIVEKGIGYVPSEeikelindpkfialda 195 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819...
Q9YB53                        120 AGDLSi-----sDPQVKPV--------------YPETPLIYVAPGQRIHVQAFARLGRGKEHTK---------------- 164 Aeropyrum pernix K1...
3HKZ_O                        111 SKDIKs-----eDPSVVPI--------------SGDIPIVLLGTNQKISLEARLRLGYGKEHAK---------------- 155 Saccharolobus solfataricus P2...
P39471                        111 SRDLKs-----eDQMITPV--------------SGAIPIVLLGSKQKISLEARLRLGYGKEHIK---------------- 155 Sulfolobus acidocaldarius DSM 639...
WGS:AAGF:cds.TTHERM_00193849A 113 SLDLKqrqdhtdEDAVRPIkvysilrdeygnkrEVGIPIIKLSKGQQIHFECEAQKGIGKMHSK---------------- 176
Q00813                         98 SSDLVs-----sDPMVEAA--------------DDNIPIIDLKEGQRLEVEADAVLDTGREHAK---------------- 142 Haloarcula marismortui ATCC 43049...
Q9HQJ4                         98 SGDLVs-----nDPEVEAA--------------DENIPIIELKDDQRLELEADAVMGHGRDHAK---------------- 142 Halobacterium salinarum NRC-1...
O26144                        108 SGDLVs-----eTPAVKPV--------------YPDIPLVKLGDDDELELEAVAQLGVGREHAK---------------- 152 Methanothermobacter thermautotrophicus str. Delta H...
Q9V198                        101 SGDLKs-----dDPDVKPA--------------NPDIPIVKLAKGQRLVFNAFAKLGRGKDHAK---------------- 145 Pyrococcus abyssi GE5...
O28002                        108 SGDFIs-----dDPDVVFA--------------IDNIPVLELFEGQQLMLEAVARLGTGREHAK---------------- 152 Archaeoglobus fulgidus DSM 4304...
4NOI_B                        196 fFT 198 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Q9YB53                        165 -WS 166 Aeropyrum pernix K1
3HKZ_O                        156 -FI 157 Saccharolobus solfataricus P2
P39471                        156 -YS 157 Sulfolobus acidocaldarius DSM 639
WGS:AAGF:cds.TTHERM_00193849A 177 -WN 178
Q00813                        143 -HQ 144 Haloarcula marismortui ATCC 43049
Q9HQJ4                        143 -HQ 144 Halobacterium salinarum NRC-1
O26144                        153 -WE 154 Methanothermobacter thermautotrophicus str. Delta H
Q9V198                        146 -WQ 147 Pyrococcus abyssi GE5
O28002                        153 -FQ 154 Archaeoglobus fulgidus DSM 4304
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