3J0K,5TW1,5TJG,1BDF,4NOI,6GML,3H0G,5LMX


Conserved Protein Domain Family
RNA_pol_A_bac

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pfam01000: RNA_pol_A_bac 
Click on image for an interactive view with Cn3D
RNA polymerase Rpb3/RpoA insert domain
Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal
Statistics
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PSSM-Id: 366412
View PSSM: pfam01000
Aligned: 66 rows
Threshold Bit Score: 51.099
Threshold Setting Gi: 75261713
Created: 23-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J0K_C        49 VEVetNTtvladefIAHRLGLIPLQSMDIEQl--EYSRDCfc------------eDHCDKCsvVLTLQAFGESEst---- 110 human
Q9VMX3        84 VYIynNTsiiqdevLAHRMGLLPLR-ADPRLf--AYRTEEst------------eAGTEQDtlEFELKVKCSRRrdagkd 148 fruit fly
XP_001136605  92 VLVynNTsivqdeiLAHRLGLIPIH-ADPRLf--EYRNQGd-------------eEGTEIDtlQFRLQVRCTRNphaakd 155 chimpanzee
O08521        88 VYIinNTsiiqdevLSHRIGLVPISADPDMFkwfqhp------------lpgqeaTHTDYDtvVFSLNKKCEFNknaatd 155 Chinese hamster
O26144        44 VNMyrNDakmfdevLAHRLGLVPLAADPEFAeslKMPEECdc------------eEYCSECsvSLTLRKKGPGV------ 105 Methanothermoba...
Q9V198        45 VEFyeNDsalfdeiIAHRLAMIPLKTPVDRFel--------------------daLELDDYtvTLSLEAEGPGI------ 98  Pyrococcus abys...
O28002        46 VDIylNSsyfydevIAHRLAMLPIKTYLDRFnmqse--------------cscggEGCPNCqiSFRLNVEGPKV------ 105 Archaeoglobus f...
Q57648        46 VYIyeNSssmddeiLAHRLGLIPIKg----------------------------kPLLENEviTFTLEKEGPCT------ 91  Methanocaldococ...
EGA84384      13 VYFfnNTsviqdevLAHRIGLVPLKVDPDMLtwvdsn-------------lpddeKFTDENtiVLSLNVKCTRNpdapkg 79  Saccharomyces c...
Q9UAY9        99 IYLyqNTsviqdevLCHRLGLLPLRVDPRGF---QFPKEKvvginekgvdcdeepEGDPAKnlIFKINVSCTKNrnavpt 175 Caenorhabditis ...
3J0K_C       111 ----------tnVYSKDLVIv-----------SNLMGRNighpiiqdkeGNGVLICKLRKGQELKLTCVAKKGIAKEHAK 169 human
Q9VMX3       149 qsnfddiyknhkVYSGHLKWlpkgkq-aqiysESAVNCI----------HDDILIAQLRPGHELDLRLVAVKGLGRDHAK 217 fruit fly
XP_001136605 156 ssdpnelyvnhkVYTRHMTWiplgnq-adlfpEGTIRPV----------HDDILIAQLRPGQEIDLLMHCVKGIGKDHAK 224 chimpanzee
O08521       156 ekdpkrlyvnseVYSGDLIWkpqgrq-eerfaDNPIRVV----------NPDIVVAKLRPGQEIDLEAHAILGIGQDHAK 224 Chinese hamster
O26144       106 ------------VYSGDLVSe-----------TPAVKPV----------YPDIPLVKLGDDDELELEAVAQLGVGREHAK 152 Methanothermoba...
Q9V198        99 ------------VYSGDLKSd-----------DPDVKPA----------NPDIPIVKLAKGQRLVFNAFAKLGRGKDHAK 145 Pyrococcus abys...
O28002       106 ------------VYSGDFISd-----------DPDVVFA----------IDNIPVLELFEGQQLMLEAVARLGTGREHAK 152 Archaeoglobus f...
Q57648        92 ------------VYSSDLKSe-----------NGEVA------------FKNIPIVKLGKGQRIQIECEAIPGIGKVHAK 136 Methanocaldococ...
EGA84384      80 stdpkelynnahVYARDLKFepqgrq-sttfaDCPVVPA----------DPDILLAKLRPGQEISLKAHCILGIGGDHAK 148 Saccharomyces c...
Q9UAY9       176 atdpkqlyhnssVYSRAFEWvpiadqktqfteEAHPRMV----------SDDILVAKLRPGQEIEASCHAVKGIGRDHAK 245 Caenorhabditis ...
3J0K_C       170 WG 171 human
Q9VMX3       218 FS 219 fruit fly
XP_001136605 225 FS 226 chimpanzee
O08521       225 FS 226 Chinese hamster
O26144       153 WE 154 Methanothermobacter thermautotrophicus str. Delta H
Q9V198       146 WQ 147 Pyrococcus abyssi GE5
O28002       153 FQ 154 Archaeoglobus fulgidus DSM 4304
Q57648       137 WQ 138 Methanocaldococcus jannaschii DSM 2661
EGA84384     149 FS 150 Saccharomyces cerevisiae VL3
Q9UAY9       246 FS 247 Caenorhabditis elegans
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