4NOI,3HKZ,3H0G,4XLQ,3J0K


Conserved Protein Domain Family
RNA_pol_A_bac

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pfam01000: RNA_pol_A_bac 
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RNA polymerase Rpb3/RpoA insert domain
Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal
Statistics
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PSSM-Id: 307235
View PSSM: pfam01000
Aligned: 59 rows
Threshold Bit Score: 45.7081
Threshold Setting Gi: 75261713
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4NOI_B        83 IHI--DG-------VAHEFDSXRGXLEDVALf-iINLKKLrfkI----------KGDSNkeIVEFSFKGSKE------IY 136 Campylobacter j...
Q9YB53        50 AYIfdNTtavydemVAHRLGLVVLDSNEAVE---KYRRPEecag-------kepSEEDCfvEVSLEAEVDAEgetgryIT 119 Aeropyrum perni...
3HKZ_D        44 VYFieNNsplydeiLAHRLALIPFMSEEALD---TYRWPEecie-------cteNCEKCytKIYIEAEAPNEpr---mIY 110 Sulfolobus solf...
P39471        44 VYFieNNsplydeiLAHRLALVPFVSDEALE---HYRPPEecae-------ckeNCDGCynRVYLDVEAKDQpl---mIY 110 Sulfolobus acid...
Q00813        48 VRVieNTsvmfneqIGLRLGLVPLTTDLd------------------------dFEIGDevTLSLSVDGPST------AY 97  Haloarcula mari...
Q9HQJ4        49 VRFveNSsvmfdeqLGLRLGLVPLTTPEDYA-----------------------AGEAV--TLALDVEGPGT------AY 97  Halobacterium s...
O26144        44 VNMyrNDakmfdevLAHRLGLVPLAADPEFAeslKMPEECdc----------eeYCSECsvSLTLRKKGPGV------VY 107 Methanothermoba...
Q9V198        45 VEFyeNDsalfdeiIAHRLAMIPLKTPVDRFeld------------------alELDDYtvTLSLEAEGPGI------VY 100 Pyrococcus abys...
O28002        46 VDIylNSsyfydevIAHRLAMLPIKTYLDRF------------NmqsecscggeGCPNCqiSFRLNVEGPKV------VY 107 Archaeoglobus f...
XP_001471367  47 VKVyeNTsslpdeyIAHRLGLIPLNSAKVDDy--NYIWNCnc----------qgECDRCtiHFDLRVSNFTNev--leVT 112 Tetrahymena the...
4NOI_B       137 GKDLN-------NDQVEVV--------------NKDAYLATINEDAELKFTLIVEKGIGYVPSEeikelindpkfialda 195 Campylobacter j...
Q9YB53       120 AGDLSi-----sDPQVKPV--------------YPETPLIYVAPGQRIHVQAFARLGRGKEHTK---------------- 164 Aeropyrum perni...
3HKZ_D       111 SKDIKs-----eDPSVVPI--------------SGDIPIVLLGTNQKISLEARLRLGYGKEHAK---------------- 155 Sulfolobus solf...
P39471       111 SRDLKs-----eDQMITPV--------------SGAIPIVLLGSKQKISLEARLRLGYGKEHIK---------------- 155 Sulfolobus acid...
Q00813        98 SSDLVs-----sDPMVEAA--------------DDNIPIIDLKEGQRLEVEADAVLDTGREHAK---------------- 142 Haloarcula mari...
Q9HQJ4        98 SGDLVs-----nDPEVEAA--------------DENIPIIELKDDQRLELEADAVMGHGRDHAK---------------- 142 Halobacterium s...
O26144       108 SGDLVs-----eTPAVKPV--------------YPDIPLVKLGDDDELELEAVAQLGVGREHAK---------------- 152 Methanothermoba...
Q9V198       101 SGDLKs-----dDPDVKPA--------------NPDIPIVKLAKGQRLVFNAFAKLGRGKDHAK---------------- 145 Pyrococcus abys...
O28002       108 SGDFIs-----dDPDVVFA--------------IDNIPVLELFEGQQLMLEAVARLGTGREHAK---------------- 152 Archaeoglobus f...
XP_001471367 113 SLDLKqrqdhtdEDAVRPIkvysilrdeygnkrEVGIPIIKLSKGQQIHFECEAQKGIGKMHSK---------------- 176 Tetrahymena the...
4NOI_B       196 fFT 198 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Q9YB53       165 -WS 166 Aeropyrum pernix K1
3HKZ_D       156 -FI 157 Sulfolobus solfataricus P2
P39471       156 -YS 157 Sulfolobus acidocaldarius DSM 639
Q00813       143 -HQ 144 Haloarcula marismortui ATCC 43049
Q9HQJ4       143 -HQ 144 Halobacterium salinarum NRC-1
O26144       153 -WE 154 Methanothermobacter thermautotrophicus str. Delta H
Q9V198       146 -WQ 147 Pyrococcus abyssi GE5
O28002       153 -FQ 154 Archaeoglobus fulgidus DSM 4304
XP_001471367 177 -WN 178 Tetrahymena thermophila SB210
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