Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Halobacterium salinarum NRC-1)

Halobacterium salinarum NRC-1

Taxonomy ID: 64091 (for references in articles please use NCBI:txid64091)
current name
Halobacterium salinarum NRC-1
equivalent:
Halobacterium salinarum str. NRC-1
NCBI BLAST name: euryarchaeotes
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Halobacterium halobium NRC-1
equivalent:
Halobacterium salinarum strain NRC-1
heterotypic synonym
Halobacterium sp. ATCC 700922
heterotypic synonym
Halobacterium sp. JCM 11081
equivalent:
Halobacterium sp. NRC-1
heterotypic synonym
Halobacterium sp. (strain NRC-1)
heterotypic synonym
Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081)
Lineage( full )
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum
   Entrez records   
Database name Direct links
Nucleotide 306
Protein 8,560
Structure 76
Genome 1
Conserved Domains 1
GEO Datasets 2,134
Gene 3,157
SRA Experiments 58
Identical Protein Groups 3,196
Bio Project 99
Bio Sample 61
Bio Systems 135
Assembly 1
Probe 7
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
DasSarma P & DasSarma S (2008)
DasSarma, P., and DasSarma, S. "On the origin of prokaryotic 'species': the taxonomy of halophilic Archaea." Saline Systems (2008) 4:5.
Gruber C et al. (2004)
Gruber, C., Legat, A., Pfaffenhuemer, M., Radax, C., Weidler, G., Busse, H.-J., and Stan-Lotter, H. "Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum." Extremophiles (2004) 8:431-439. Published online 30 July 2004. DOI: 10.1007/s00792-004-0403-6
Ng WV et al. (2000)
Ng, W.V., Kennedy, S.P., Mahairas, G.G., Berquist, B., Pan, M., Shukla, H.D., Lasky, S.R., Baliga, N.S., Thorsson, V., Sbrogna, J., Swartzell, S., Weir, D., Hall, J., Dahl, T.A., Welti, R., Goo, Y.A., Leithauser, B., Keller, K., Cruz, R., Danson, M.J., Hough, D.W., Maddocks, D.G., Jablonski, P.E., Krebs, M.P., Angevine, C.M., Dale, H., Isenbarger, T.A., Peck, R.F., Pohlschroder, M., Spudich, J.L., Jung, K.W., Alam, M., Freitas, T., Hou, S., Daniels, C.J., Dennis, P.P., Omer, A.D., Ebhardt, H., Lowe, T.M., Liang, P., Riley, M., Hood, L., and DasSarma, S. "Genome sequence of Halobacterium species NRC-1." Proc. Natl. Acad. Sci. U S A (2000) 97:12176-12181.
Pfeiffer F et al. (2008)
Pfeiffer, F., Schuster, S.C., Broicher, A., Falb, M., Palm, P., Rodewald, K., Ruepp, A., Soppa, J., Tittor, J., and Oesterhelt, D. "Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1." Genomics (2008) 91:335-346.
Pfeiffer F et al. (2019), other link:https://mra.asm.org/content/8/28/e00429-19
Pfeiffer, F., Marchfelder, A., Habermann, B., and Dyall-Smith, M.L. "The genome sequence of the Halobacterium salinarum type strain is closely related to that of laboratory strains NRC-1 and R1." Microbiol. Resour. Announc. (2019) 8:e00429-19.
Pfeiffer F et al. (2020)
Pfeiffer, F., Losensky, G., Marchfelder, A., Habermann, B., and Dyall-Smith, M. "Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T) ) and the laboratory strains R1 and NRC-1." MicrobiologyOpen (2020) 9(2):e974.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Halobacterium salinarum NRC-1; ATCC 700922 organism-specific BioCyc
GOLD: Go0000749 organism-specific Genomes On Line Database
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]