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Report for CCDS12526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12526.1 Public Homo sapiens 19 FBXO17 24 110 108 CCDS HistoryNCBI Gene:115290Re-query CCDS DB by CCDS ID:12526.1Re-query CCDS DB by GeneID:115290See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12526.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292852.9 ENSP00000292852.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292852.9Link to Ensembl Protein Viewer:ENSP00000292852.3Re-query CCDS DB by Nucleotide ID:ENST00000292852Re-query CCDS DB by Protein ID:ENSP00000292852
Original member Current member EBI ENST00000595329.5 ENSP00000470361.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595329.5Link to Ensembl Protein Viewer:ENSP00000470361.1Re-query CCDS DB by Nucleotide ID:ENST00000595329Re-query CCDS DB by Protein ID:ENSP00000470361
Original member Current member NCBI NM_024907.7 NP_079183.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024907.7Link to Protein Sequence:NP_079183.4Re-query CCDS DB by Nucleotide ID:NM_024907Re-query CCDS DB by Protein ID:NP_079183Link to BLAST:NP_079183.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079183.4 278 Q96EF6 278 100% 0 0

Chromosomal Locations for CCDS 12526.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38942608 38942751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38944969 38945104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38946472 38946567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38948567 38948678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38949971 38950319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGGCGCCCGGCTATCGCGGCGACGGCTGCCGGCGGACCCATCCCTGGCCCTGGACGCGCTGCCCCCGG
AGCTGCTGGTGCAGGTGCTGAGCCACGTGCCGCCACGCTCCTTGGTCACGCGATGCCGCCCAGTGTGCCG
CGCCTGGCGCGACATAGTGGACGGGCCCACTGTGTGGCTGCTGCAGCTGGCCCGCGACCGCAGCGCCGAG
GGCCGCGCACTCTACGCAGTGGCTCAACGCTGCCTGCCCAGCAACGAAGACAAGGAGGAGTTCCCGCTGT
GCGCCCTGGCGCGCTACTGTCTGCGCGCGCCCTTCGGCCGCAATCTCATCTTCAACTCCTGCGGAGAGCA
GGGCTTCAGAGGCTGGGAGGTGGAGCATGGCGGGAACGGCTGGGCCATAGAAAAGAACCTAACACCGGTG
CCTGGGGCTCCTTCGCAGACCTGCTTCGTGACCTCTTTCGAATGGTGCTCCAAGAGGCAGCTTGTGGACC
TGGTGATGGAAGGGGTGTGGCAGGAGCTGCTGGACAGCGCCCAGATTGAGATCTGTGTGGCTGACTGGTG
GGGCGCTCGAGAGAACTGCGGCTGCGTCTACCAGCTCCGGGTCCGCCTTCTGGATGTGTATGAAAAGGAA
GTGGTCAAGTTCTCAGCCTCACCTGACCCGGTCCTTCAGTGGACTGAGAGGGGCTGCCGACAGGTCTCCC
ACGTCTTCACCAACTTTGGCAAGGGCATCCGCTACGTATCTTTTGAGCAGTACGGGAGAGACGTGAGTTC
CTGGGTGGGGCACTATGGCGCCCTTGTGACCCACTCCAGTGTGAGGGTCAGGATCCGTCTGTCCTAG

Translation (278 aa):
MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAE
GRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVEHGGNGWAIEKNLTPV
PGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKE
VVKFSASPDPVLQWTERGCRQVSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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