NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40713.1 Public Mus musculus 9 Ube3d 23 108 98 CCDS HistoryNCBI Gene:70348Re-query CCDS DB by CCDS ID:40713.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034986.13 ENSMUSP00000034986.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034986.13Link to Ensembl Protein Viewer:ENSMUSP00000034986.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034986Re-query CCDS DB by Protein ID:ENSMUSP00000034986
Original member NCBI NM_027394.2 NP_081670.1 Updated not alive Link to Nucleotide Sequence:NM_027394.2Link to Protein Sequence:NP_081670.1Re-query CCDS DB by Nucleotide ID:NM_027394Re-query CCDS DB by Protein ID:NP_081670
Current member NCBI NM_027394.3 NP_081670.1 Accepted alive Link to Nucleotide Sequence:NM_027394.3Link to Protein Sequence:NP_081670.1Re-query CCDS DB by Nucleotide ID:NM_027394Re-query CCDS DB by Protein ID:NP_081670Link to BLAST:NP_081670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081670.1 368 Q8BX13 368 100% 0 0

Chromosomal Locations for CCDS 40713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 86307856 86307876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86372341 86372479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86422841 86423004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86425262 86425370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86427368 86427437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86435284 86435353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86440586 86440754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86448763 86448853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86451814 86452010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86464741 86464817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCGGTGGCTGCGGCGGAAACGCGCGTGTTCCTGGAAGTGCGGAGACGGCTGCAGAGTGCGCTGCTAA
TCCTGGGTGGGCCAGATGAAGGAGGGATGCACCTGGACATTTCCATAACGCCCACCTCTCTTTTGGTGAG
AACCCCTGACGGCTGCACCGAGATCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCTCGTGTGGCGGG
CTGCAGTATATCAGTGGCGATGGTTTACATCTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACAGCCGA
TTTCAGTGTTTAATCAAAGCTTGCAAGCCCAAGAATGTTGCACCTTTTATTGCCAGTCCTGTGGTGAAGT
CACGATAAAGGACAGGAAACTCCTCAGGGTGCTCCCCCTGCCCAGTGAGAACTGGAGCGCTCTGGTCGGA
GAGTGGTGCTGCCATCCCGACCCCTTTGCTAATAGGCCTCTTCATCCGAGAGAAAATGACTGTTTTATTG
GGGACTCTTTCTTCTTAGTGAATTTGAAAAGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAGTCAT
TTGTAAGCGTTGCAAGGTAACGTTGGGAGAGACCATGTCATCAGAAACAACCAAATTTTACATGACAGAG
GTAATTATCCGGCCATCTGAGGGAAGTTTTCCTAACATACCAAGGTCTCAGTTCCTTCAGAGCATTATTG
CCCAGTGCCTGGTGGAGCTCTCCTCTGCTAGAAGTACTTTCAGATTCACGATTCAAGGTCAGGATGGCAA
AGTGTACATCTTGCTCTGGGTTTTGAACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGT
AGCAGGAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAGCTGGCTCTGGCTCTGCCTGGAATGCCATCAAAG
TCCTCTACCAGCCCTGTATCAAAAGCAGGAATAAAGAGCTTGCTAGCTCCTGGGAAGGTGACATCAGCGT
CCACCCTTTAACCCTGCCCTCTGCAACCTGTTTGGAGCTGCTGCTAATACTATCCAGGAACAATGCCTCC
CTGCCTCTGTCCCTTCGCCAAATGAATTCCTTCCAGGTGGCCTTTTTGAAGATGTAA

Translation (368 aa):
MAVAAAETRVFLEVRRRLQSALLILGGPDEGGMHLDISITPTSLLVRTPDGCTEIRLPAGVRLVPSSCGG
LQYISGDGLHLRLRVQAESSPQPISVFNQSLQAQECCTFYCQSCGEVTIKDRKLLRVLPLPSENWSALVG
EWCCHPDPFANRPLHPRENDCFIGDSFFLVNLKSDLEQEPKANTKVICKRCKVTLGETMSSETTKFYMTE
VIIRPSEGSFPNIPRSQFLQSIIAQCLVELSSARSTFRFTIQGQDGKVYILLWVLNSDSLVIEPLRSSSC
SRKFPLLESSLEAGSGSAWNAIKVLYQPCIKSRNKELASSWEGDISVHPLTLPSATCLELLLILSRNNAS
LPLSLRQMNSFQVAFLKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH