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Report for CCDS27627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27627.1 Public Mus musculus 15 Pdxp 23 108 98 CCDS HistoryNCBI Gene:57028Re-query CCDS DB by CCDS ID:27627.1Re-query CCDS DB by GeneID:57028See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089378.4 ENSMUSP00000086796.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089378.4Link to Ensembl Protein Viewer:ENSMUSP00000086796.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089378Re-query CCDS DB by Protein ID:ENSMUSP00000086796
Original member Current member NCBI NM_020271.3 NP_064667.2 Accepted alive Link to Nucleotide Sequence:NM_020271.3Link to Protein Sequence:NP_064667.2Re-query CCDS DB by Nucleotide ID:NM_020271Re-query CCDS DB by Protein ID:NP_064667Link to BLAST:NP_064667.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064667.2 292 P60487 292 100% 0 0

Chromosomal Locations for CCDS 27627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78913970 78914531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78918130 78918446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCGCGCTGCGAGCGGCTGCGCGGCGCGGCCCTGCGCGACGTGCTGGGCCAGGCGCAGGGAGTCCTGT
TCGACTGCGACGGAGTGCTGTGGAACGGCGAACGCATCGTGCCGGGCGCCCCTGAGCTGCTGCAGCGGCT
GGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCGAGCTGGCGCTG
CGCTTCGCCCGCCTGGGCTTCGCGGGGCTGCGCGCCGAGCAGCTCTTCAGCTCCGCGCTGTGTGCCGCGC
GCCTCCTGCGCCAGCGGCTGTCCGGGCCGCCCGACGCATCGGGCGCAGTGTTCGTGCTGGGAGGCGAGGG
GCTGCGCGCTGAGCTGCGCGCCGCGGGGCTGCGCCTGGCGGGGGACCCCGGCGAGGACCCGCGCGTGCGC
GCCGTGCTCGTAGGCTACGACGAGCAGTTTTCCTTCTCCAGGTTGACCGAGGCGTGCGCGCACCTGCGCG
ACCCCGACTGCCTGCTCGTGGCCACCGATCGCGACCCTTGGCACCCGCTCAGCGACGGAAGCCGGACCCC
CGGTACTGGAAGCCTGGCTGCCGCGGTGGAGACAGCCTCGGGACGCCAGGCCCTGGTGGTGGGCAAGCCC
AGCCCTTACATGTTCCAGTGCATCACAGAAGACTTCAGCGTGGACCCCGCCCGCACGCTGATGGTGGGGG
ACCGCCTGGAGACCGACATACTCTTTGGCCACCGCTGCGGCATGACCACCGTGCTCACGCTCACGGGCGT
CTCCAGCCTCGAAGAAGCCCAGGCCTACCTGACGGCTGGCCAGCGTGACCTTGTGCCTCACTACTATGTG
GAGAGCATTGCGGACTTGATGGAGGGGCTGGAGGACTGA

Translation (292 aa):
MARCERLRGAALRDVLGQAQGVLFDCDGVLWNGERIVPGAPELLQRLARAGKNTLFVSNNSRRARPELAL
RFARLGFAGLRAEQLFSSALCAARLLRQRLSGPPDASGAVFVLGGEGLRAELRAAGLRLAGDPGEDPRVR
AVLVGYDEQFSFSRLTEACAHLRDPDCLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKP
SPYMFQCITEDFSVDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSSLEEAQAYLTAGQRDLVPHYYV
ESIADLMEGLED


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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