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Report for CCDS1066.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1066.2 Public Homo sapiens 1 ATP8B2 24 110 108 CCDS HistoryNCBI Gene:57198Re-query CCDS DB by CCDS ID:1066.2Re-query CCDS DB by GeneID:57198See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1066.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368489.6 ENSP00000357475.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368489.6Link to Ensembl Protein Viewer:ENSP00000357475.4Re-query CCDS DB by Nucleotide ID:ENST00000368489Re-query CCDS DB by Protein ID:ENSP00000357475
Original member Current member NCBI NM_001370597.1 NP_001357526.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370597.1Link to Protein Sequence:NP_001357526.1Re-query CCDS DB by Nucleotide ID:NM_001370597Re-query CCDS DB by Protein ID:NP_001357526Link to BLAST:NP_001357526.1
Original member Current member NCBI NM_001372009.1 NP_001358938.1 Accepted alive Link to Nucleotide Sequence:NM_001372009.1Link to Protein Sequence:NP_001358938.1Re-query CCDS DB by Nucleotide ID:NM_001372009Re-query CCDS DB by Protein ID:NP_001358938Link to BLAST:NP_001358938.1

Chromosomal Locations for CCDS 1066.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154328142 154328172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154330396 154330454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154330815 154330928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331048 154331146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331444 154331505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331606 154331678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331954 154332024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154332618 154332697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154334107 154334265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154334503 154334591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154337348 154337544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154340854 154341062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154342480 154342523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154342796 154342961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154343113 154343301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154343453 154343568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154343893 154344057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154344143 154344254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154344395 154344500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154344641 154344785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154344971 154345154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154345322 154345545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154345800 154345883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154346231 154346476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154346620 154346758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154348408 154348538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154348840 154349118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3573 nt):
ATGGCAGTGTGTGCAAAAAAGCGCCCCCCAGAAGAAGAAAGGAGGGCGCGGGCTAATGACCGAGAATACA
ATGAGAAATTCCAGTATGCGAGTAACTGCATCAAGACCTCCAAGTACAATATTCTCACCTTCCTGCCTGT
CAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACACTTACTTCCTGTTCCTCCTCATTCTGCAGTTGATC
CCCCAGATCTCTTCCCTGTCCTGGTTCACCACCATTGTGCCTTTGGTTCTTGTCCTCACCATCACAGCTG
TTAAAGATGCCACTGATGACTATTTCCGCCACAAGAGCGATAACCAGGTGAATAACCGCCAGTCTCAGGT
GCTGATCAATGGAATCCTCCAGCAGGAGCAGTGGATGAATGTCTGTGTTGGTGATATTATCAAGCTAGAA
AATAACCAGTTTGTGGCGGCGGATCTCCTCCTCCTTTCCAGCAGTGAGCCCCATGGGCTGTGTTACATAG
AGACAGCAGAACTTGATGGCGAGACCAACATGAAAGTACGTCAGGCGATTCCAGTCACCTCAGAATTGGG
AGACATCAGTAAGCTTGCCAAGTTTGACGGTGAAGTGATCTGTGAACCTCCCAACAACAAACTGGACAAA
TTCAGCGGAACCCTCTACTGGAAGGAAAATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGGCT
GTGTGCTGCGAAACACCGAGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCCGACACTAAGCTGATGCA
AAACAGCGGCAGAACAAAGTTCAAAAGAACGAGTATCGATCGCCTAATGAATACCCTGGTGCTCTGGATT
TTTGGATTCCTGGTTTGCATGGGGGTGATCCTGGCCATTGGCAATGCCATCTGGGAGCACGAGGTGGGGA
TGCGTTTCCAGGTCTACCTGCCGTGGGATGAGGCAGTGGACAGTGCCTTCTTCTCTGGCTTCCTCTCCTT
CTGGTCCTACATCATCATCCTCAACACCGTTGTGCCCATTTCACTCTATGTCAGTGTGGAGGTCATCCGT
CTGGGCCACAGCTACTTCATCAACTGGGATAAGAAGATGTTCTGCATGAAGAAGCGGACGCCTGCAGAAG
CCCGCACCACCACCCTAAACGAGGAGCTGGGCCAGGTGGAGTACATCTTCTCCGACAAGACGGGCACCCT
CACCCAGAACATCATGGTTTTCAACAAGTGCTCCATCAATGGCCACAGCTATGGTGATGTGTTTGACGTC
CTGGGACACAAAGCTGAATTGGGAGAGAGGCCTGAACCTGTTGACTTCTCCTTCAATCCTCTGGCTGACA
AGAAGTTCTTATTTTGGGACCCCAGCCTGCTGGAGGCTGTCAAGATCGGGGACCCCCACACGCATGAGTT
CTTCCGCCTCCTTTCCCTGTGTCATACTGTCATGTCAGAAGAAAAGAACGAAGGAGAGCTGTACTACAAA
GCTCAGTCCCCAGATGAGGGGGCCCTGGTCACCGCAGCCAGGAACTTTGGTTTTGTTTTCCGCTCTCGCA
CCCCCAAAACAATCACCGTCCATGAGATGGGCACAGCCATCACCTACCAGCTGCTGGCCATCCTGGACTT
CAACAACATCCGCAAGCGGATGTCGGTCATAGTGCGGAATCCAGAGGGGAAGATCCGACTCTACTGCAAA
GGGGCTGACACTATCCTACTGGACAGACTGCACCACTCCACTCAAGAGCTGCTCAACACCACCATGGACC
ACCTTAATGAGTACGCAGGGGAAGGGCTGAGGACCCTGGTGCTGGCCTACAAGGATCTGGATGAAGAGTA
CTACGAGGAGTGGGCTGAGCGACGCCTCCAGGCCAGCCTGGCCCAGGACAGCCGGGAGGACAGGCTGGCT
AGCATCTATGAGGAGGTTGAGAACAACATGATGCTGCTGGGTGCAACGGCCATTGAGGACAAACTTCAGC
AAGGGGTTCCAGAGACCATTGCCCTCCTGACACTGGCCAACATCAAGATTTGGGTGCTAACCGGAGACAA
GCAAGAGACGGCTGTGAACATCGGCTATTCCTGCAAGATGCTGACGGATGACATGACTGAGGTTTTCATA
GTCACTGGCCATACTGTCCTGGAGGTGCGGGAGGAGCTCAGGAAAGCCCGGGAGAAGATGATGGACTCAT
CCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAAGCTTTCTTCTTCCAAGCTAACTTCTGTCCTGGA
GGCCGTTGCTGGGGAGTACGCCCTGGTCATAAATGGTCACAGCCTGGCCCACGCACTGGAGGCAGACATG
GAGCTGGAGTTTCTGGAGACAGCGTGTGCCTGCAAAGCTGTCATCTGCTGCCGGGTGACCCCCTTGCAGA
AGGCACAGGTGGTAGAACTGGTCAAGAAGTACAAGAAGGCTGTGACGCTTGCCATTGGAGACGGAGCCAA
TGATGTCAGCATGATCAAAACGGCTCACATTGGTGTGGGGATCAGTGGGCAGGAAGGGATCCAGGCTGTC
TTGGCCTCCGATTACTCCTTCTCCCAGTTCAAGTTCCTGCAGCGCCTCCTGCTGGTGCATGGGCGCTGGT
CCTACCTGCGAATGTGCAAGTTTCTTTGCTATTTCTTCTACAAAAACTTTGCTTTCACCATGGTCCACTT
CTGGTTTGGCTTCTTCTGTGGCTTCTCAGCCCAGACCGTCTATGACCAGTATTTCATCACCCTGTATAAC
ATCGTGTACACCTCCCTGCCAGTCCTGGCTATGGGGGTCTTTGATCAGGATGTCCCCGAGCAGCGGAGCA
TGGAGTACCCTAAGCTGTATGAGCCGGGCCAGCTGAACCTTCTCTTCAACAAGCGGGAGTTCTTCATCTG
CATCGCCCAGGGCATCTACACCTCCGTGCTCATGTTCTTCATTCCCTATGGGGTGTTTGCTGATGCCACC
CGGGATGATGGCACTCAGCTGGCTGACTACCAGTCCTTTGCAGTCACTGTGGCCACATCCTTGGTCATTG
TGGTTAGCGTGCAGATTGGGCTCGACACAGGCTACTGGACGGCCATCAACCACTTCTTCATCTGGGGAAG
CCTTGCTGTTTACTTTGCCATCCTCTTTGCCATGCACAGCAATGGGCTCTTCGACATGTTTCCCAACCAG
TTCCGGTTTGTGGGGAATGCCCAGAACACCTTGGCCCAGCCCACGGTGTGGCTGACCATTGTGCTCACCA
CAGTCGTCTGCATCATGCCCGTGGTTGCCTTCCGATTCCTCAGGCTCAACCTGAAGCCGGATCTCTCCGA
CACGGTCCGCTACACACAGCTCGTGAGGAAGAAGCAGAAGGCCCAGCACCGCTGCATGCGGCGGGTTGGC
CGCACTGGCTCCCGGCGCTCCGGCTATGCCTTCTCCCATCAGGAGGGCTTCGGGGAGCTCATCATGTCTG
GCAAGAACATGCGGCTGAGCTCTCTCGCGCTCTCCAGCTTCACCACCCGCTCCAGCTCCAGCTGGATTGA
GAGCCTGCGCAGGAAGAAGAGTGACAGTGCCAGTAGCCCCAGTGGCGGTGCCGACAAGCCCCTCAAGGGC
TGA

Translation (1190 aa):
MAVCAKKRPPEEERRARANDREYNEKFQYASNCIKTSKYNILTFLPVNLFEQFQEVANTYFLFLLILQLI
PQISSLSWFTTIVPLVLVLTITAVKDATDDYFRHKSDNQVNNRQSQVLINGILQQEQWMNVCVGDIIKLE
NNQFVAADLLLLSSSEPHGLCYIETAELDGETNMKVRQAIPVTSELGDISKLAKFDGEVICEPPNNKLDK
FSGTLYWKENKFPLSNQNMLLRGCVLRNTEWCFGLVIFAGPDTKLMQNSGRTKFKRTSIDRLMNTLVLWI
FGFLVCMGVILAIGNAIWEHEVGMRFQVYLPWDEAVDSAFFSGFLSFWSYIIILNTVVPISLYVSVEVIR
LGHSYFINWDKKMFCMKKRTPAEARTTTLNEELGQVEYIFSDKTGTLTQNIMVFNKCSINGHSYGDVFDV
LGHKAELGERPEPVDFSFNPLADKKFLFWDPSLLEAVKIGDPHTHEFFRLLSLCHTVMSEEKNEGELYYK
AQSPDEGALVTAARNFGFVFRSRTPKTITVHEMGTAITYQLLAILDFNNIRKRMSVIVRNPEGKIRLYCK
GADTILLDRLHHSTQELLNTTMDHLNEYAGEGLRTLVLAYKDLDEEYYEEWAERRLQASLAQDSREDRLA
SIYEEVENNMMLLGATAIEDKLQQGVPETIALLTLANIKIWVLTGDKQETAVNIGYSCKMLTDDMTEVFI
VTGHTVLEVREELRKAREKMMDSSRSVGNGFTYQDKLSSSKLTSVLEAVAGEYALVINGHSLAHALEADM
ELEFLETACACKAVICCRVTPLQKAQVVELVKKYKKAVTLAIGDGANDVSMIKTAHIGVGISGQEGIQAV
LASDYSFSQFKFLQRLLLVHGRWSYLRMCKFLCYFFYKNFAFTMVHFWFGFFCGFSAQTVYDQYFITLYN
IVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVFADAT
RDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAINHFFIWGSLAVYFAILFAMHSNGLFDMFPNQ
FRFVGNAQNTLAQPTVWLTIVLTTVVCIMPVVAFRFLRLNLKPDLSDTVRYTQLVRKKQKAQHRCMRRVG
RTGSRRSGYAFSHQEGFGELIMSGKNMRLSSLALSSFTTRSSSSWIESLRRKKSDSASSPSGGADKPLKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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