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Report for CCDS25271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25271.1 Public Mus musculus 11 Itga3 23 108 98 CCDS HistoryNCBI Gene:16400Re-query CCDS DB by CCDS ID:25271.1Re-query CCDS DB by GeneID:16400See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001548.13 ENSMUSP00000001548.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001548.13Link to Ensembl Protein Viewer:ENSMUSP00000001548.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001548Re-query CCDS DB by Protein ID:ENSMUSP00000001548
Original member Current member NCBI NM_013565.3 NP_038593.1 Accepted alive Link to Nucleotide Sequence:NM_013565.3Link to Protein Sequence:NP_038593.1Re-query CCDS DB by Nucleotide ID:NM_013565Re-query CCDS DB by Protein ID:NP_038593Link to BLAST:NP_038593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038593.1 1053 Q62470-1 1053 100% 0 0

Chromosomal Locations for CCDS 25271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95046480 95046590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95046921 95047046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95051452 95051550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95052444 95052557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053225 95053347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053732 95053914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95054075 95054177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055696 95055773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055857 95055936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056441 95056512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056704 95056851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057084 95057181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057271 95057420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057967 95058103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95058212 95058279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059324 95059410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059556 95059692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059779 95059867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95061878 95062074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95062553 95062763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95063135 95063221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95065763 95066012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068225 95068304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068712 95068839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95076131 95076336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGGGCCCCGGCCCCTGCCGCGTGCCCCGCGCCCCTGGCTGGCTGCTCCGCGCTCTGGCCTTGATGGTGG
CG
GCTTGCGGCCGGGTCGCCTTCGCCTTCAACCTGGACACCCGATTCCTGGTGGTGAAGGAGGCGGTGAA
C
CCCGGTAGCCTCTTCGGCTACTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACAGCGCTACCTCCTT
CTG
GCCGGGGCTCCCCGGGACCTCGCTGTGGGTGATGACTATACCAACCGGACTGGTGCTGTGTACCTGT
GT
CCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAAGTGACCCTGACCATCA
C
ATTATTGAGGATATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTCTGT
GCC
CATCGGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATG
TG
CGTGGCAATGACCTACAGCTCGACCCCGGCGATGACTGGCAGACATACCACAACGAGATGTGTAACAG
C
AACACTGACTACTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTA
TAC
TTCGGTGCCCCTGGTGCCTACAACTGGAAAGGAAACAGCTACATGATTCAGCGGAAGGACTGGGATT
TA
TCTGAATATAGCTACAGGGGCTCAGAGGAGCAAGGAAACCTTTATATTGGGTACACGGTGCAGGTAGG
C
AACGCCATCCTACATCCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGC
GCT
GTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGG
TG
GGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACCTCCTGGT
G
GGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCG
GGC
GCATCCTTCCCTGATCAACCTTCCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTGGCATCTCTA
TA
GCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTT
G
GGCAAAGTCTACATCTACCACAGCAGCTCCGGGGGGCTCCTCAGGCAGCCCCAGCAGATAATCCATGGA
GAG
AAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGGATGAAA
AC
CTTTACCCAGACCTGCTAGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCGGGCCCGGCCTGTCAT
C
AATATCCTCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCTGCGCTTTGTACAGCTACCTCC
TG
T
GTTCAGGTGGAGCTGTGTTTTGCCTACAACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACATCA
CC
CTGGCTTACACACTGGAGGCTGACAGGGACCGACGCCCACCCAGGCTCCGATTTGCCCGCAGCCAGTC
A
TCTGTCTTCCACGGCTTCTTCTCCATGCCAGAGACACATTGCCAGACACTGGAGTTACTGCTGATGGAC
AAT
GTTCGCGATAAACTCCGTCCTATCGTCATTGCCATGAACTACTCCTTACCTCTGCGCATGCCTGATC
GC
CTCAAGCTCGGCTTGCGGTCTCTGGATGCCTACCCAGTCCTCAACCAGGCACAGGCTATGGAGAATCA
C
ACTGAGGTCCACTTCCAGAAAGAGTGCGGGCCAGACAACAAGTGCGACAGCAACCTGCAGATGCGAGCA
GCC
TTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAAGAAACTGTTTT
TG
AGCATCAATGTGACCAATTCACCGAGCAGCCAACGGGCTGGGGAAGATGCGCATGAGGCATTGCTCAC
C
CTAGAGGTGCCATCCGCCCTGCTACTGTCCTCCGTGCGCCCGTCTGGGACCTGCCAAGCTAATAACGAG
ACC
ATCCTGTGTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCTCATTGCCTTTGAGG
TC
ATCGGGGTAACGTTGCACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGA
C
AACTTGCAGCCCGTACTCCTGACTTTGCAGGTGGACTACACCCTCCAGGCCTCGCTCAGCTTAATGAAT
CAT
CGGTTGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGGATGTGG
GA
AGTCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGGAGATGGGCTGGCAGCCTTGGGCACACTGGT
T
CTAGGTCTGGAGTGGCCCTATGAAGTTACCAATGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATC
CAT
AGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTG
AC
CCTGGAGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTC
C
CCGCCTGTCACACTAGCTGCTGCCAAAAAAGCCAAGTCTGAGACTGTGTTGACCTGCTCCAATGGCCGT
GCC
CGCTGTGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCAC
GG
GTGTGGAACAGCACCTTCATTGAGGACTACAAAGACTTTGACAGAGTCAGGGTAGATGGCTGGGCTAC
C
CTGTTCCTGAGAACCAGCATCCCTACCATCAACATGGAGAACAAGACCACATGGTTCTCTGTGGACATT
GAC
TCAGAGCTGGTGGAGGAGCTGCCGGCTGAGATTGAGCTGTGGTTGGTGCTTGTGGCCGTGGGTGCTG
GG
TTGCTGCTGCTGGGGCTCATCATCCTCCTCTTGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCG
T
GCCCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTGACC
GAC
GACTACTGA


Translation (1053 aa):
MGPGPCRVPRAPGWLLRALALMVAACGRVAFAFNLDTRFLVVKEAVNPGSLFGYSVALHRQTERQQRYLL
L
AGAPRDLAVGDDYTNRTGAVYLCPLTAHKDDCERMDISEK
SDPDHHIIEDMWLGVTVASQGPAGRVLVC
A
HRYTKVLWSGLEDQRRMVGKCYVRGNDLQLDPGDDWQTYHNEMCNSNTDYLQTGMCQLGTSGGFTQNTV
Y
FGAPGAYNWK
GNSYMIQRKDWDLSEYSYRGSEEQGNLYIGYTVQVGNAILHPTDIITVVTGAPRHQHMG
A
VFLLKQESGGDLQRKQVLKGTQVGAYFGSAIALADLNND
GWQDLLVGAPYYFERKEEVGGAVYVFMNQA
G
ASFPDQPSLLLHGPSRSAFGISIASIGDINQDGFQ
DIAVGAPFEGLGKVYIYHSSSGGLLRQPQQIIHG
E
KLGLPGLATFGYSLSGKMDVDENLYPDLLVGSLSDHIVLL
RARPVINILHRTLVARPAVLDPALCTATS
C
VQVELCFAYNQSAGNPNYRRNITLAYTLEADRDRRPPRLRFARSQSSVFHGFFSMPETHCQTLELLLMD
N
VRDKLRPIVIAMNYSLPLRMPDRLKLGLRSLDAYPVLNQAQAMENHTE
VHFQKECGPDNKCDSNLQMRA
A
FLSEQLQPLS
RLQYSRDTKKLFLSINVTNSPSSQRAGEDAHEALLTLEVPSALLLSSVRPSGTCQANNE
T
ILCELGNPFKRNQR
MELLIAFEVIGVTLHTRDLPVLLQLSTSSHQDNLQPVLLTLQVDYTLQASLSLMN
H
RLQSFFGGTVMGEAAMKTAEDVGSPLKYEFQ
VSPVGDGLAALGTLVLGLEWPYEVTNGKWLLYPTEITI
H
SNGSWPCQPSGNLVNPLNLTLS
DPGVTPLSPQRRRRQLDPGGDQSSPPVTLAAAKKAKSETVLTCSNGR
A
RCVWLECPLPDTSNITNVTVKARVWNSTFIE
DYKDFDRVRVDGWATLFLRTSIPTINMENKTTWFSVDI
D
SELVEELPAEIELWLVLVAVGAGLLLLGLIILLLWK
CGFFKRARTRALYEAKRQKAEMKSQPSETERLT
D
DY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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