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Report for CCDS13200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13200.1 Public Homo sapiens 20 KIF3B 24 110 108 CCDS HistoryNCBI Gene:9371Re-query CCDS DB by CCDS ID:13200.1Re-query CCDS DB by GeneID:9371See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375712.4 ENSP00000364864.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375712.4Link to Ensembl Protein Viewer:ENSP00000364864.3Re-query CCDS DB by Nucleotide ID:ENST00000375712Re-query CCDS DB by Protein ID:ENSP00000364864
Original member Current member NCBI NM_004798.4 NP_004789.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004798.4Link to Protein Sequence:NP_004789.1Re-query CCDS DB by Nucleotide ID:NM_004798Re-query CCDS DB by Protein ID:NP_004789Link to BLAST:NP_004789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004789.1 747 O15066-1 747 100% 0 0

Chromosomal Locations for CCDS 13200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32309778 32311181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32316218 32316319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32316527 32316649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32316756 32316874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32326771 32326884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32327556 32327661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32330141 32330319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32331223 32331319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGTCAAAGTTGAAAAGCTCAGAGTCAGTCAGGGTGGTGGTTCGCTGTCGGCCCATGAATGGCAAGGAAA
AGGCTGCTTCGTATGACAAAGTGGTGGATGTGGATGTTAAGCTGGGGCAGGTGTCTGTGAAGAACCCCAA
AGGGACGGCCCATGAAATGCCCAAGACCTTCACCTTTGATGCCGTCTATGACTGGAATGCCAAGCAGTTT
GAACTGTACGATGAGACGTTCCGACCACTTGTTGACTCTGTCCTGCAAGGTTTCAATGGAACCATTTTTG
CCTATGGACAAACTGGGACAGGAAAAACCTACACCATGGAAGGAATCCGTGGTGACCCTGAAAAAAGAGG
AGTCATTCCTAACTCATTTGACCATATCTTCACCCACATCTCTCGATCCCAGAATCAACAATACCTGGTC
AGGGCTTCTTACTTAGAGATCTACCAGGAGGAGATCCGAGATTTGCTCTCAAAGGATCAGACCAAAAGGC
TTGAGCTCAAAGAGAGGCCTGACACAGGAGTGTATGTGAAAGACCTGTCTTCCTTTGTCACCAAGAGTGT
GAAGGAGATAGAGCATGTGATGAATGTGGGGAACCAGAACCGTTCTGTCGGTGCTACCAACATGAACGAG
CACAGCTCGCGTTCTCATGCAATTTTCGTTATCACTATTGAGTGCAGCGAGGTGGGCCTCGATGGTGAAA
ACCACATCCGTGTAGGAAAATTGAACCTTGTAGATCTTGCTGGCAGCGAACGGCAAGCCAAGACCGGCGC
ACAAGGGGAGAGATTAAAAGAAGCTACCAAGATCAACCTCTCCCTTTCCGCTTTGGGTAATGTCATCTCT
GCTCTAGTGGACGGCAAAAGCACTCACATTCCATATCGGGACTCAAAGCTTACCAGGCTCCTCCAAGATT
CCCTTGGTGGCAATGCCAAGACTGTGATGGTGGCCAACGTGGGGCCTGCCTCTTACAACGTAGAAGAGAC
TCTGACCACTCTGCGATATGCCAACCGTGCCAAAAACATTAAGAACAAACCAAGGGTCAATGAGGACCCC
AAGGATGCCCTCCTTCGAGAATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAAAAACGGTCCA
TTGGTAGGAGGAAGAGGCGAGAGAAGCGGAGGGAAGGTGGTGGCAGTGGTGGGGGTGGGGAAGAGGAGGA
GGAGGAGGGAGAAGAGGGTGAGGAGGAAGGGGATGATAAGGATGATTACTGGCGGGAACAGCAAGAAAAA
CTGGAGATTGAGAAGCGGGCCATTGTAGAGGATCACAGCTTGGTTGCAGAGGAGAAGATGAGGCTGCTGA
AGGAGAAAGAGAAAAAGATGGAGGACCTGCGGCGGGAGAAGGATGCTGCCGAGATGCTGGGCGCCAAGAT
CAAGGCCATGGAGAGTAAGTTGCTTGTTGGAGGAAAAAATATAGTAGATCATACGAATGAACAGCAGAAA
ATCCTGGAGCAGAAACGACAGGAAATTGCAGAGCAGAAACGTCGAGAAAGAGAAATCCAGCAACAGATGG
AAAGTCGAGATGAGGAGACCTTGGAACTTAAAGAGACATACAGCTCATTGCAGCAAGAGGTGGACATCAA
GACCAAAAAACTCAAAAAGCTCTTCTCCAAGCTTCAGGCAGTGAAGGCTGAGATCCATGACCTCCAAGAA
GAACACATCAAGGAGCGCCAAGAGCTAGAGCAGACTCAGAATGAGCTCACCAGGGAGCTGAAACTCAAGC
ATCTTATTATAGAAAACTTTATCCCTCTGGAAGAAAAAAGTAAAATTATGAATAGAGCCTTCTTTGATGA
AGAGGAAGATCATTGGAAACTACATCCTATAACCAGACTGGAGAACCAGCAGATGATGAAGCGGCCAGTC
TCAGCCGTGGGATATAAGAGACCATTGAGCCAGCACGCAAGAATGTCCATGATGATTCGTCCAGAGGCCC
GATATAGGGCAGAAAACATTGTGCTGTTAGAGCTGGACATGCCCAGCCGGACCACCAGAGACTATGAGGG
TCCAGCCATTGCCCCCAAGGTCCAGGCTGCATTGGATGCGGCTCTGCAGGATGAAGATGAGATACAGGTG
GATGCATCATCATTTGAAAGCACTGCAAATAAGAAATCCAAGGCCAGGCCTAAAAGTGGAAGGAAGTCGG
GATCCTCCTCCTCTTCCTCAGGAACCCCTGCATCTCAGCTTTATCCACAGTCTCGGGGGCTGGTTCCAAA
GTAA

Translation (747 aa):
MSKLKSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQF
ELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLV
RASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNE
HSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVIS
ALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP
KDALLREFQEEIARLKAQLEKRSIGRRKRREKRREGGGSGGGGEEEEEEGEEGEEEGDDKDDYWREQQEK
LEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMESKLLVGGKNIVDHTNEQQK
ILEQKRQEIAEQKRREREIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQE
EHIKERQELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHPITRLENQQMMKRPV
SAVGYKRPLSQHARMSMMIRPEARYRAENIVLLELDMPSRTTRDYEGPAIAPKVQAALDAALQDEDEIQV
DASSFESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRGLVPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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