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    zeb2 zinc finger E-box binding homeobox 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100492834, updated on 25-Apr-2024

    Summary

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    Official Symbol
    zeb2provided by Xenbase
    Official Full Name
    zinc finger E-box binding homeobox 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-479558
    See related
    Ensembl:ENSXETG00000000237
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sip1; XSip1; zfhx1b; XZfhx1b
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (78517555..78637723)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (73320717..73440742)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105948570 Neighboring gene uncharacterized LOC105948569 Neighboring gene uncharacterized LOC116407718 Neighboring gene glycosyltransferase like domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger E-box-binding homeobox 2
    Names
    smad interaction protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      78517555..78637723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002936718.5 → XP_002936764.1  zinc finger E-box-binding homeobox 2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8SJL6, F6U825
      Related
      ENSXETP00000097590.1, ENSXETT00000078466.2
      Conserved Domains (5) summary
      COG5048
      Location:1024 → 1125
      COG5048; FOG: Zn-finger [General function prediction only]
      cd00086
      Location:654 → 696
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00017
      Location:1001 → 1021
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:282 → 304
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:296 → 319
      zf-H2C2_2; Zinc-finger double domain

    2. XM_012971006.3 → XP_012826460.1  zinc finger E-box-binding homeobox 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QSU5, A0A8J0SXZ5
      Related
      ENSXETP00000068932.2, ENSXETT00000105133.2
      Conserved Domains (5) summary
      COG5048
      Location:1054 → 1155
      COG5048; FOG: Zn-finger [General function prediction only]
      cd00086
      Location:684 → 726
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00017
      Location:1031 → 1051
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:312 → 334
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:326 → 349
      zf-H2C2_2; Zinc-finger double domain

    3. XM_004917656.4 → XP_004917713.1  zinc finger E-box-binding homeobox 2 isoform X3

      UniProtKB/TrEMBL
      A0A6I8Q6F6, F6U825
      Related
      ENSXETP00000064150.1, ENSXETT00000087605.2
      Conserved Domains (4) summary
      cd00086
      Location:654 → 696
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00017
      Location:1001 → 1021
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:282 → 304
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:296 → 319
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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