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    zeb1b zinc finger E-box binding homeobox 1b [ Takifugu rubripes (torafugu) ]

    Gene ID: 101073424, updated on 8-Mar-2024

    Summary

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    Gene symbol
    zeb1b
    Gene description
    zinc finger E-box binding homeobox 1b
    See related
    Ensembl:ENSTRUG00000001422
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    zeb1
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 10 NC_042294.1 (12179334..12191615)
    101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004074184.1 (1651..9335, complement)

    Chromosome 10 - NC_042294.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 438 Neighboring gene uncharacterized LOC115251226 Neighboring gene Rho GTPase activating protein 12b Neighboring gene kinesin-1 heavy chain-like Neighboring gene uncharacterized LOC115251321

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger E-box-binding homeobox 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042294.1 Reference fTakRub1.2 Primary Assembly

      Range
      12179334..12191615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029842835.1 → XP_029698695.1  zinc finger E-box-binding homeobox 1 isoform X1

      UniProtKB/TrEMBL
      H2RT06
      Related
      ENSTRUP00000003273.3, ENSTRUT00000003292.3
      Conserved Domains (6) summary
      smart00389
      Location:541 → 581
      HOX; Homeodomain
      sd00017
      Location:826 → 846
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:199 → 221
      zf-C2H2; Zinc finger, C2H2 type
      pfam05283
      Location:598 → 672
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
      pfam13465
      Location:866 → 891
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:159 → 182
      zf-H2C2_5; C2H2-type zinc-finger domain

    2. XM_029842836.1 → XP_029698696.1  zinc finger E-box-binding homeobox 1 isoform X2

      Conserved Domains (6) summary
      smart00389
      Location:540 → 580
      HOX; Homeodomain
      sd00017
      Location:825 → 845
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:198 → 220
      zf-C2H2; Zinc finger, C2H2 type
      pfam05283
      Location:597 → 671
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
      pfam13465
      Location:865 → 890
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:158 → 181
      zf-H2C2_5; C2H2-type zinc-finger domain
    Nucleotide Protein
    Heading Accession and Version

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