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    ZFR zinc finger RNA binding protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100410052, updated on 3-Apr-2024

    Summary

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    Gene symbol
    ZFR
    Gene description
    zinc finger RNA binding protein
    See related
    Ensembl:ENSCJAG00000018740
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See ZFR in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (169583877..169672317)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (171184315..171272765)

    Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene SUB1 regulator of transcription Neighboring gene uncharacterized LOC128931393 Neighboring gene uncharacterized LOC100895315 Neighboring gene U6 spliceosomal RNA Neighboring gene myotubularin related protein 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071443.1 Reference mCalJa1.2.pat.X

      Range
      169583877..169672317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002745083.6 → XP_002745129.2  zinc finger RNA-binding protein isoform X2

      See identical proteins and their annotated locations for XP_002745129.2

      UniProtKB/TrEMBL
      A0A8J8YH10, F7IMC3, F7IPN3, U3F435
      Related
      ENSCJAP00000034883.1
      Conserved Domains (4) summary
      smart00572
      Location:784 → 1038
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00451
      Location:581 → 612
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:584 → 606
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl25495
      Location:382 → 551
      Endomucin; Endomucin

    2. XM_054252314.1 → XP_054108289.1  zinc finger RNA-binding protein isoform X3

    3. XM_035291718.2 → XP_035147609.1  zinc finger RNA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8I3W4W4, A0A8J8YH10
      Conserved Domains (4) summary
      smart00572
      Location:792 → 1046
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      PHA03255
      Location:390 → 559
      PHA03255; BDLF3; Provisional
      smart00451
      Location:589 → 620
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:341 → 363
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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