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    THOC2 THO complex subunit 2 [ Bos taurus (cattle) ]

    Gene ID: 507738, updated on 5-Mar-2024

    Summary

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    Gene symbol
    THOC2
    Gene description
    THO complex subunit 2
    See related
    Ensembl:ENSBTAG00000008388
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (7964555..8083088, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2285bj-1 Neighboring gene glutamate ionotropic receptor AMPA type subunit 3 Neighboring gene tyrosine-protein kinase Fer-like Neighboring gene U6 spliceosomal RNA Neighboring gene small EDRK-rich factor 2-like Neighboring gene partitioning defective 6 homolog beta-like Neighboring gene X-linked inhibitor of apoptosis

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of THO complex part of transcription export complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 2
    Names
    THO complex 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206697.1 → NP_001193626.1  THO complex subunit 2

      See identical proteins and their annotated locations for NP_001193626.1

      Status: INFERRED

      Source sequence(s)
      NKLS02000030
      UniProtKB/TrEMBL
      F1N153
      Conserved Domains (5) summary
      TIGR01642
      Location:1448 → 1556
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus
      NF033838
      Location:1301 → 1551
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7964555..8083088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227456.5 → XP_005227513.1  THO complex subunit 2 isoform X11

      Conserved Domains (5) summary
      TIGR01642
      Location:1447 → 1555
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus
      NF033838
      Location:1300 → 1550
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    2. XM_024987826.2 → XP_024843594.1  THO complex subunit 2 isoform X5

      Conserved Domains (4) summary
      TIGR01642
      Location:1479 → 1587
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    3. XM_005227455.5 → XP_005227512.1  THO complex subunit 2 isoform X10

      See identical proteins and their annotated locations for XP_005227512.1

      UniProtKB/TrEMBL
      F1N153
      Conserved Domains (5) summary
      TIGR01642
      Location:1448 → 1556
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus
      NF033838
      Location:1301 → 1551
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    4. XM_010821352.4 → XP_010819654.1  THO complex subunit 2 isoform X4

      Related
      ENSBTAP00000011040.7, ENSBTAT00000011040.7
      Conserved Domains (4) summary
      TIGR01642
      Location:1480 → 1588
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    5. XM_010821356.4 → XP_010819658.1  THO complex subunit 2 isoform X9

      Conserved Domains (5) summary
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam12278
      Location:1451 → 1559
      SDP_N; Sex determination protein N terminal
      pfam12871
      Location:1358 → 1474
      PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    6. XM_010821349.4 → XP_010819651.1  THO complex subunit 2 isoform X2

      Conserved Domains (4) summary
      TIGR01642
      Location:1483 → 1591
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    7. XM_010821355.4 → XP_010819657.1  THO complex subunit 2 isoform X8

      Conserved Domains (5) summary
      TIGR01642
      Location:1452 → 1560
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus
      NF033838
      Location:1305 → 1555
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    8. XM_010821353.4 → XP_010819655.1  THO complex subunit 2 isoform X6

      Conserved Domains (4) summary
      TIGR01642
      Location:1479 → 1587
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    9. XM_010821351.4 → XP_010819653.1  THO complex subunit 2 isoform X3

      See identical proteins and their annotated locations for XP_010819653.1

      Conserved Domains (4) summary
      TIGR01642
      Location:1484 → 1592
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    10. XM_010821350.4 → XP_010819652.1  THO complex subunit 2 isoform X3

      See identical proteins and their annotated locations for XP_010819652.1

      Conserved Domains (4) summary
      TIGR01642
      Location:1484 → 1592
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    11. XM_010821348.4 → XP_010819650.1  THO complex subunit 2 isoform X1

      See identical proteins and their annotated locations for XP_010819650.1

      Conserved Domains (4) summary
      TIGR01642
      Location:1484 → 1592
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    12. XM_010821347.4 → XP_010819649.1  THO complex subunit 2 isoform X1

      See identical proteins and their annotated locations for XP_010819649.1

      Conserved Domains (4) summary
      TIGR01642
      Location:1484 → 1592
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:878 → 1177
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 646
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    13. XM_005227453.5 → XP_005227510.1  THO complex subunit 2 isoform X7

      Conserved Domains (5) summary
      PTZ00121
      Location:1297 → 1585
      PTZ00121; MAEBL; Provisional
      TIGR01642
      Location:1448 → 1556
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam11262
      Location:874 → 1173
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam11732
      Location:568 → 642
      Thoc2; Transcription- and export-related complex subunit
      pfam16134
      Location:10 → 566
      THOC2_N; THO complex subunit 2 N-terminus

    14. XM_059883317.1 → XP_059739300.1  THO complex subunit 2 isoform X13

    15. XM_059883316.1 → XP_059739299.1  THO complex subunit 2 isoform X12

      Related
      ENSBTAP00000079195.1, ENSBTAT00000102375.1
    Nucleotide Protein Strain
    Heading Accession and Version

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