U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 [ Bos taurus (domestic cattle) ]

Gene ID: 514673, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
GDPD2provided by VGNC
Official Full Name
glycerophosphodiester phosphodiesterase domain containing 2provided by VGNC
Primary source
VGNC:VGNC:29311
See related
BGD:BT16585; Ensembl:ENSBTAG00000012863
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: X
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (80011699..80021134, complement)

Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene testis expressed 11 Neighboring gene small nucleolar RNA U2-19 Neighboring gene discs large MAGUK scaffold protein 3 Neighboring gene uncharacterized LOC101904691 Neighboring gene kinesin family member 4A Neighboring gene zinc finger protein Pegasus-like Neighboring gene PDZ domain containing 11

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC127567

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glycerophosphoinositol inositolphosphodiesterase GDPD2
NP_001029643.2
XP_005228064.1
XP_005228066.1
XP_015317134.1
XP_059739358.1
XP_059739359.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034471.2 → NP_001029643.2  glycerophosphoinositol inositolphosphodiesterase GDPD2

    See identical proteins and their annotated locations for NP_001029643.2

    Status: VALIDATED

    Source sequence(s)
    NKLS02000030
    UniProtKB/TrEMBL
    F1MCP4
    Related
    ENSBTAP00000017095.5, ENSBTAT00000017095.6
    Conserved Domains (1) summary
    cl14615
    Location:198 → 501
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    80011699..80021134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015461648.3 → XP_015317134.1  glycerophosphoinositol inositolphosphodiesterase GDPD2 isoform X1

    UniProtKB/TrEMBL
    F1MCP4
    Conserved Domains (1) summary
    cl14615
    Location:198 → 501
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  2. XM_005228009.5 → XP_005228066.1  glycerophosphoinositol inositolphosphodiesterase GDPD2 isoform X1

    See identical proteins and their annotated locations for XP_005228066.1

    UniProtKB/TrEMBL
    F1MCP4
    Conserved Domains (1) summary
    cl14615
    Location:198 → 501
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  3. XM_059883376.1 → XP_059739359.1  glycerophosphoinositol inositolphosphodiesterase GDPD2 isoform X2

  4. XM_005228007.5 → XP_005228064.1  glycerophosphoinositol inositolphosphodiesterase GDPD2 isoform X1

    See identical proteins and their annotated locations for XP_005228064.1

    UniProtKB/TrEMBL
    F1MCP4
    Conserved Domains (1) summary
    cl14615
    Location:198 → 501
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  5. XM_059883375.1 → XP_059739358.1  glycerophosphoinositol inositolphosphodiesterase GDPD2 isoform X1

    UniProtKB/TrEMBL
    F1MCP4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials