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tmem161a transmembrane protein 161A [ Danio rerio (zebrafish) ]

Gene ID: 492692, updated on 12-Sep-2024

Summary

Official Symbol
tmem161aprovided by ZNC
Official Full Name
transmembrane protein 161Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-267
See related
Ensembl:ENSDARG00000012790 AllianceGenome:ZFIN:ZDB-GENE-041111-267
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7149790; zgc:152766; si:dkey-11n6.2
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; polster; and somite. Orthologous to human TMEM161A (transmembrane protein 161A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (18230958..18241390, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (18208568..18216397, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 221 Neighboring gene BLOC-1 related complex subunit 8 Neighboring gene myocyte enhancer factor 2b Neighboring gene uncharacterized LOC110438274 Neighboring gene microRNA 9-4 Neighboring gene GATA zinc finger domain containing 2Ab Neighboring gene uncharacterized LOC103909585

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044317.1NP_001037782.1  transmembrane protein 161A precursor

    See identical proteins and their annotated locations for NP_001037782.1

    Status: PROVISIONAL

    Source sequence(s)
    BC121758
    UniProtKB/Swiss-Prot
    Q0V947, Q1LVH8, Q567V8
    Related
    ENSDARP00000078314.6, ENSDART00000083879.6
    Conserved Domains (1) summary
    pfam10268
    Location:2492
    Tmemb_161AB; Predicted transmembrane protein 161AB

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    18230958..18241390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216285.1XP_068072386.1  transmembrane protein 161A isoform X1

    Related
    ENSDARP00000007148.9, ENSDART00000027605.10