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LOC100168944 suppressor of hairless protein [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100168944, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100168944
Gene description
suppressor of hairless protein
See related
APHIDBASE:ACYPI009607; EnsemblRapid:LOC100168944
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100168944 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A3 NC_042496.1 (14410653..14413717)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384689.1 (21305..24349, complement)

Chromosome A3 - NC_042496.1Genomic Context describing neighboring genes Neighboring gene separin Neighboring gene uncharacterized LOC103310682 Neighboring gene uncharacterized LOC115034454 Neighboring gene phosphoenolpyruvate carboxykinase [GTP], mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of hairless protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042496.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    14410653..14413717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001951178.4 → XP_001951213.2  suppressor of hairless protein

    UniProtKB/TrEMBL
    A0A8R2AE90
    Related
    XP_001951213.2, XM_001951178.4
    Conserved Domains (3) summary
    cd01176
    Location:341 → 437
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:170 → 319
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:38 → 164
    LAG1-DNAbind; LAG1, DNA binding
Nucleotide Protein Strain
Heading Accession and Version

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