Conserved Protein Domain Family
IPT_RBP-Jkappa

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cd01176: IPT_RBP-Jkappa 
IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Statistics
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PSSM-Id: 238581
Aligned: 7 rows
Threshold Bit Score: 181.502
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O02019    381 PVTPVPVV-HSLQLNGGGDVAMLEVNGENFSpQLKVWFGEVEADTMYRCEEGLLCVVPDISEFREGwtw------vkqSV 453 Halocynthia roretzi
P28159    424 PVTPVPIV-NSLNLNGGGDVAMLELSGDNFTpHLQVWFGDVEAETMYRCTETLLCVVPEISQFRGEwlw------vrqPT 496 fruit fly
NP_942579 338 PVTPVPVVvESLQLNGGGDVAMLELTGQNFTpNLRVWFGDVEADTMYRCGESVLCVVPDISAFREGwrw------vrqPV 411 zebrafish
Q91880    351 PVTPVPVV-ESLQLNGGGDVAMLELTGQNFTpNLRVWFGDVEAETMYRCAESMLCVVPDISAFREGwrw------vrqPV 423 African clawed frog
BAC99044  446 PVTPVPLV-SDLHLNGGGDVAMLELRGENFTpDLKVWFGCVEAETMYRNNDCMLCVVPDISALCGEwry------iqrPT 518 Hemicentrotus pulc...
O08674    379 PVTPVPLI-STLELSGGGDVATLELHGENFHaGLKVWFGDVEAETMYRSPRSLVCVVPDVAAFGSDwrw------lrtPI 451 house mouse
AAM98006  556 PISPCPVV-GSLEVDGHGEASRVELHGRDFKpNLKVWFGATPVETTFRSEESLHCSIPPVSQVRNEqthwmftnrttgDV 634 Caenorhabditis ele...
O02019    454 QVPINLVRHDGIIYPTNLTFTFTP 477 Halocynthia roretzi
P28159    497 QVPISLVRNDGIIYATGLTFTYTP 520 fruit fly
NP_942579 412 QVPVTLVRNDGIIYSTALTFTYTP 435 zebrafish
Q91880    424 QVPVTLVRNDGVIYSTSLTFTYTP 447 African clawed frog
BAC99044  519 QVNIMLVRQDGIIYPTGRMFTYTP 542 Hemicentrotus pulcherrimus
O08674    452 TVPVSLLRADALFYPSPFSFTYTP 475 house mouse
AAM98006  635 EVPISLVRDDGVVYSSGLTFSYKS 658 Caenorhabditis elegans
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