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BCAS1 brain enriched myelin associated protein 1 [ Sus scrofa (pig) ]

Gene ID: 100126238, updated on 17-Aug-2024

Summary

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Official Symbol
BCAS1provided by VGNC
Official Full Name
brain enriched myelin associated protein 1provided by VGNC
Primary source
VGNC:VGNC:98872
See related
Ensembl:ENSSSCG00000007485
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in mixtures (RPKM 14.4), lung (RPKM 8.1) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See BCAS1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (54920714..55039470, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (61712035..61809255, complement) , (61650565..61658234, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100513893 Neighboring gene uncharacterized LOC110257493 Neighboring gene uncharacterized LOC106504276 Neighboring gene uncharacterized LOC110257494 Neighboring gene uncharacterized LOC106506724 Neighboring gene cytochrome P450 family 24 subfamily A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in myelination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
breast carcinoma-amplified sequence 1
Names
breast carcinoma amplified sequence 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110175.1 → NP_001103645.1  breast carcinoma-amplified sequence 1

    See identical proteins and their annotated locations for NP_001103645.1

    Status: PROVISIONAL

    Source sequence(s)
    CR956383
    UniProtKB/TrEMBL
    A0A287B3N5, A0A8D1BAF9, A5GFR8
    Conserved Domains (1) summary
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    54920714..55039470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077187.1 → XP_020932846.1  breast carcinoma-amplified sequence 1 isoform X7

    UniProtKB/TrEMBL
    A0A287AEP1
    Conserved Domains (1) summary
    cl26386
    Location:139 → 316
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_021077191.1 → XP_020932850.1  breast carcinoma-amplified sequence 1 isoform X11

    UniProtKB/TrEMBL
    A0A8D1BDZ0
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:262 → 483
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_021077186.1 → XP_020932845.1  breast carcinoma-amplified sequence 1 isoform X7

    UniProtKB/TrEMBL
    A0A287AEP1
    Related
    ENSSSCP00000042346.2, ENSSSCT00000045913.2
    Conserved Domains (1) summary
    cl26386
    Location:139 → 316
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  4. XM_021077188.1 → XP_020932847.1  breast carcinoma-amplified sequence 1 isoform X8

    UniProtKB/TrEMBL
    A0A287AW48, A0A8D1PBL3
    Related
    ENSSSCP00000048094.3, ENSSSCT00000065610.3
    Conserved Domains (1) summary
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  5. XM_021077183.1 → XP_020932842.1  breast carcinoma-amplified sequence 1 isoform X5

    UniProtKB/TrEMBL
    A0A287B3N5, A0A8D1BAF9, A5GFR8
    Related
    ENSSSCP00000051022.2, ENSSSCT00000043859.2
    Conserved Domains (1) summary
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  6. XM_021077192.1 → XP_020932851.1  breast carcinoma-amplified sequence 1 isoform X12

    UniProtKB/TrEMBL
    A0A8D0PVR8, F6Q2T0
    Related
    ENSSSCP00000007976.3, ENSSSCT00000008194.4
    Conserved Domains (2) summary
    cl00478
    Location:296 → 455
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  7. XM_021077193.1 → XP_020932852.1  breast carcinoma-amplified sequence 1 isoform X13

    UniProtKB/TrEMBL
    A0A287AX13, A0A8D0PVR8
    Related
    ENSSSCP00000048409.2, ENSSSCT00000064889.2
    Conserved Domains (2) summary
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:262 → 452
    Neuromodulin_N; Gap junction protein N-terminal region

  8. XM_021077195.1 → XP_020932854.1  breast carcinoma-amplified sequence 1 isoform X15

    UniProtKB/TrEMBL
    A0A8D0PVR8
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:137 → 419
    Atrophin-1; Atrophin-1 family

  9. XM_021077194.1 → XP_020932853.1  breast carcinoma-amplified sequence 1 isoform X14

    UniProtKB/TrEMBL
    A0A8D0PVR8
    Conserved Domains (2) summary
    cl26386
    Location:139 → 308
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:256 → 438
    Neuromodulin_N; Gap junction protein N-terminal region

  10. XM_021077182.1 → XP_020932841.1  breast carcinoma-amplified sequence 1 isoform X4

    UniProtKB/TrEMBL
    A0A8D1BCK6
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:254 → 538
    Neuromodulin_N; Gap junction protein N-terminal region

  11. XM_021077180.1 → XP_020932839.1  breast carcinoma-amplified sequence 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D1BCK6
    Conserved Domains (1) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  12. XM_021077179.1 → XP_020932838.1  breast carcinoma-amplified sequence 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1BCK6
    Conserved Domains (1) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  13. XM_021077181.1 → XP_020932840.1  breast carcinoma-amplified sequence 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D1BCK6
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:262 → 552
    Neuromodulin_N; Gap junction protein N-terminal region

  14. XM_021077178.1 → XP_020932837.1  breast carcinoma-amplified sequence 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1BCK6
    Conserved Domains (1) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  15. XM_021077184.1 → XP_020932843.1  breast carcinoma-amplified sequence 1 isoform X6

    UniProtKB/TrEMBL
    A0A8D0PVR8
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:262 → 519
    Neuromodulin_N; Gap junction protein N-terminal region

  16. XM_021077190.1 → XP_020932849.1  breast carcinoma-amplified sequence 1 isoform X10

    UniProtKB/TrEMBL
    A0A8D1BAC3
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:262 → 497
    Neuromodulin_N; Gap junction protein N-terminal region

  17. XM_021077189.1 → XP_020932848.1  breast carcinoma-amplified sequence 1 isoform X9

    UniProtKB/TrEMBL
    A0A8D1ZB90
    Related
    ENSSSCP00000057002.3, ENSSSCT00000044472.3
    Conserved Domains (2) summary
    cl26386
    Location:69 → 271
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26511
    Location:256 → 505
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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