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Bcas1 brain enriched myelin associated protein 1 [ Mus musculus (house mouse) ]

Gene ID: 76960, updated on 8-Nov-2022

Summary

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Official Symbol
Bcas1provided by MGI
Official Full Name
brain enriched myelin associated protein 1provided by MGI
Primary source
MGI:MGI:1924210
See related
Ensembl:ENSMUSG00000013523 AllianceGenome:MGI:1924210
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NABC1; 2210416M21Rik; 9030223A09Rik
Summary
Predicted to enable protein homodimerization activity. Involved in myelination. Predicted to be located in cytosol and postsynaptic density. Orthologous to human BCAS1 (brain enriched myelin associated protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 42.9), cortex adult (RPKM 25.7) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Bcas1 in Genome Data Viewer
Location:
2; 2 H3
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (170188911..170270292, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (170343973..170427911, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 34542 Neighboring gene predicted gene, 39999 Neighboring gene brain enriched myelin associated protein 1, opposite strand 2 Neighboring gene brain enriched myelin associated protein 1, opposite strand 1 Neighboring gene predicted gene 14269 Neighboring gene predicted gene, 34608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Regulation of the Bcas1 and Baiap3 transcripts in the subthalamic nucleus in mice recovering from MPTP toxicity. Lauridsen JB, et al. Neurosci Res, 2011 Jul. PMID 21514331
  2. Characterization of the novel amplified in breast cancer-1 (NABC1) gene product. Beardsley DI, et al. Exp Cell Res, 2003 Nov 1. PMID 14567997
  3. Mice lacking BCAS1, a novel myelin-associated protein, display hypomyelination, schizophrenia-like abnormal behaviors, and upregulation of inflammatory genes in the brain. Ishimoto T, et al. Glia, 2017 May. PMID 28230289
  4. BCAS1 expression defines a population of early myelinating oligodendrocytes in multiple sclerosis lesions. Fard MK, et al. Sci Transl Med, 2017 Dec 6. PMID 29212715, Free PMC Article
  5. Histone Deacetylase 3 Governs Perinatal Cerebral Development via Neural Stem and Progenitor Cells. Li L, et al. iScience, 2019 Oct 25. PMID 31569049, Free PMC Article

See all (26) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. that the loss of BCAS1 specifically induced hypomyelination and the expression of inflammation-related genes in the brain
    Title: Mice lacking BCAS1, a novel myelin-associated protein, display hypomyelination, schizophrenia-like abnormal behaviors, and upregulation of inflammatory genes in the brain.
  2. Two transcripts with regulation from days 7 to 28 in the 1-methyl-4-phenyl-tetrahydropyridine treated groups, are identified: brain specific angiogenesis inhibitor associated protein 3 (Baiap3) and breast carcinoma amplified sequence 1 (Bcas1).
    Title: Regulation of the Bcas1 and Baiap3 transcripts in the subthalamic nucleus in mice recovering from MPTP toxicity.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4)  1 citation
  • Endonuclease-mediated (4) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
involved_in myelination IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in myelination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 PubMed 
located_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
  
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
breast carcinoma-amplified sequence 1 homolog
Names
amplified in breast cancer 1
breast carcinoma amplified sequence 1
novel amplified in breast cancer 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164369.1 → NP_001157841.1  breast carcinoma-amplified sequence 1 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AL928812, AL935134
    Consensus CDS
    CCDS50806.1
    UniProtKB/TrEMBL
    E9Q8Q5
    Related
    ENSMUSP00000104780.3, ENSMUST00000109152.9
    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional

  2. NM_029815.2 → NP_084091.2  breast carcinoma-amplified sequence 1 homolog isoform 1

    See identical proteins and their annotated locations for NP_084091.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK008957, AL928812, AL935134, BY720653
    Consensus CDS
    CCDS17121.1
    UniProtKB/Swiss-Prot
    Q80YN3, Q9CVA1
    Related
    ENSMUSP00000013667.3, ENSMUST00000013667.3
    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    170188911..170270292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252201.2 → XP_030108061.1  breast carcinoma-amplified sequence 1 homolog isoform X13

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  2. XM_030252199.2 → XP_030108059.1  breast carcinoma-amplified sequence 1 homolog isoform X11

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  3. XM_017319334.2 → XP_017174823.1  breast carcinoma-amplified sequence 1 homolog isoform X12

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  4. XM_036162697.1 → XP_036018590.1  breast carcinoma-amplified sequence 1 homolog isoform X5

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  5. XM_017319333.2 → XP_017174822.1  breast carcinoma-amplified sequence 1 homolog isoform X10

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  6. XM_017319331.2 → XP_017174820.1  breast carcinoma-amplified sequence 1 homolog isoform X7

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  7. XM_036162696.1 → XP_036018589.1  breast carcinoma-amplified sequence 1 homolog isoform X3

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  8. XM_030252198.2 → XP_030108058.1  breast carcinoma-amplified sequence 1 homolog isoform X1

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  9. XM_006500387.3 → XP_006500450.1  breast carcinoma-amplified sequence 1 homolog isoform X9

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  10. XM_017319330.2 → XP_017174819.1  breast carcinoma-amplified sequence 1 homolog isoform X6

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  11. XM_017319332.2 → XP_017174821.1  breast carcinoma-amplified sequence 1 homolog isoform X8

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  12. XM_017319329.3 → XP_017174818.1  breast carcinoma-amplified sequence 1 homolog isoform X4

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau

  13. XM_036162695.1 → XP_036018588.1  breast carcinoma-amplified sequence 1 homolog isoform X2

    Conserved Domains (1) summary
    PRK12323
    Location:82 → 275
    PRK12323; DNA polymerase III subunit gamma/tau
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80YN3.3 GenPept UniProtKB/Swiss-Prot:Q80YN3

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