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Bcas1 breast carcinoma amplified sequence 1 [ Mus musculus (house mouse) ]

Gene ID: 76960, updated on 7-Apr-2019

Summary

Official Symbol
Bcas1provided by MGI
Official Full Name
breast carcinoma amplified sequence 1provided by MGI
Primary source
MGI:MGI:1924210
See related
Ensembl:ENSMUSG00000013523
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NABC1; AI841227; 2210416M21Rik; 9030223A09Rik
Expression
Biased expression in cerebellum adult (RPKM 42.9), cortex adult (RPKM 25.7) and 6 other tissues See more
Orthologs

Genomic context

See Bcas1 in Genome Data Viewer
Location:
2; 2 H3
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (170344714..170427911, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (170172491..170253345, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34542 Neighboring gene predicted gene, 39999 Neighboring gene breast carcinoma amplified sequence 1, opposite strand 2 Neighboring gene predicted gene 14269 Neighboring gene predicted gene, 34608

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
myelination IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
PubMed 
postsynaptic density ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
breast carcinoma-amplified sequence 1 homolog
Names
amplified in breast cancer 1
novel amplified in breast cancer 1 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164369.1NP_001157841.1  breast carcinoma-amplified sequence 1 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AL928812, AL935134
    Consensus CDS
    CCDS50806.1
    UniProtKB/TrEMBL
    E9Q8Q5
    Related
    ENSMUSP00000104780.2, ENSMUST00000109152.8
    Conserved Domains (1) summary
    PRK12323
    Location:82275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
  2. NM_029815.2NP_084091.2  breast carcinoma-amplified sequence 1 homolog isoform 1

    See identical proteins and their annotated locations for NP_084091.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK008957, AL928812, AL935134, BY720653
    Consensus CDS
    CCDS17121.1
    UniProtKB/Swiss-Prot
    Q80YN3
    Related
    ENSMUSP00000013667.2, ENSMUST00000013667.2
    Conserved Domains (1) summary
    PRK12323
    Location:82275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    170344714..170427911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500382.2XP_006500445.1  breast carcinoma-amplified sequence 1 homolog isoform X2

    Conserved Domains (1) summary
    PRK12323
    Location:82275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
  2. XM_006500381.2XP_006500444.1  breast carcinoma-amplified sequence 1 homolog isoform X1

    Conserved Domains (1) summary
    PRK12323
    Location:82275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
  3. XM_017319334.1XP_017174823.1  breast carcinoma-amplified sequence 1 homolog isoform X9

  4. XM_017319331.1XP_017174820.1  breast carcinoma-amplified sequence 1 homolog isoform X5

  5. XM_017319332.1XP_017174821.1  breast carcinoma-amplified sequence 1 homolog isoform X6

  6. XM_017319333.1XP_017174822.1  breast carcinoma-amplified sequence 1 homolog isoform X8

  7. XM_006500387.2XP_006500450.1  breast carcinoma-amplified sequence 1 homolog isoform X7

    Conserved Domains (1) summary
    PRK12323
    Location:82275
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
  8. XM_017319330.1XP_017174819.1  breast carcinoma-amplified sequence 1 homolog isoform X4

  9. XM_017319329.1XP_017174818.1  breast carcinoma-amplified sequence 1 homolog isoform X3

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