U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    arid3b AT-rich interaction domain 3B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496484, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    arid3bprovided by Xenbase
    Official Full Name
    AT-rich interaction domain 3Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1018456
    See related
    Ensembl:ENSXETG00000010647
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (94340473..94388489, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (84712710..84764426, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene rho-associated protein kinase 1 Neighboring gene synaptotagmin-4 Neighboring gene zinc finger protein 609 Neighboring gene thyroid hormone receptor interactor 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AT-rich interactive domain-containing protein 3B
    Names
    AT rich interactive domain 3B (BRIGHT-like)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      94340473..94388489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004916003.4 → XP_004916060.1  AT-rich interactive domain-containing protein 3B isoform X1

      UniProtKB/TrEMBL
      A0A6I8RPV4, A0A8J0R4Y4
      Related
      ENSXETP00000087101.2, ENSXETT00000081408.2
      Conserved Domains (1) summary
      smart00501
      Location:225 → 314
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

    2. XM_002938881.5 → XP_002938927.2  AT-rich interactive domain-containing protein 3B isoform X2

      UniProtKB/TrEMBL
      A0A6I8RPV4, F7B3D8
      Related
      ENSXETP00000023324.4, ENSXETT00000023324.5
      Conserved Domains (1) summary
      cd16879
      Location:213 → 338
      ARID_ARID3B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 3B (ARID3B) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.