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    TBATA thymus, brain and testes associated [ Bos taurus (cattle) ]

    Gene ID: 515913, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TBATAprovided by VGNC
    Official Full Name
    thymus, brain and testes associatedprovided by VGNC
    Primary source
    VGNC:VGNC:35622
    See related
    BGD:BT30346; Ensembl:ENSBTAG00000021180
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    SPATIAL; C28H10orf27
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 28
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (26937387..26951957, complement)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444741 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 14 Neighboring gene uncharacterized LOC104976195 Neighboring gene sphingosine-1-phosphate lyase 1 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC133891

    General protein information

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    Preferred Names
    protein TBATA
    Names
    protein SPATIAL
    stromal protein associated with thymii and lymph node homolog
    thymus, brain and testes-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038121.2 → NP_001033210.2  protein TBATA

      See identical proteins and their annotated locations for NP_001033210.2

      Status: VALIDATED

      Source sequence(s)
      BC110031, CK774174
      UniProtKB/Swiss-Prot
      Q32KL8
      UniProtKB/TrEMBL
      F1N7Z5
      Conserved Domains (1) summary
      pfam15256
      Location:79 → 254
      SPATIAL; SPATIAL

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26937387..26951957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882507.1 → XP_059738490.1  protein TBATA isoform X3

    2. XM_059882508.1 → XP_059738491.1  protein TBATA isoform X4

    3. XM_024986650.2 → XP_024842418.1  protein TBATA isoform X6

      UniProtKB/Swiss-Prot
      Q32KL8
      Conserved Domains (1) summary
      pfam15256
      Location:79 → 270
      SPATIAL

    4. XM_059882506.1 → XP_059738489.1  protein TBATA isoform X2

    5. XM_024986649.2 → XP_024842417.1  protein TBATA isoform X5

      UniProtKB/Swiss-Prot
      Q32KL8
      Related
      ENSBTAP00000036511.4, ENSBTAT00000036655.5
      Conserved Domains (1) summary
      pfam15256
      Location:79 → 271
      SPATIAL; SPATIAL

    6. XM_059882505.1 → XP_059738488.1  protein TBATA isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32KL8.1 GenPept UniProtKB/Swiss-Prot:Q32KL8

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