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    acox1 acyl-CoA oxidase 1, palmitoyl [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548479, updated on 25-Apr-2024

    Summary

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    Official Symbol
    acox1provided by Xenbase
    Official Full Name
    acyl-CoA oxidase 1, palmitoylprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1008078
    See related
    Ensembl:ENSXETG00000012601
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    aco; acox
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (44911163..44927313, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (36300637..36316727, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 65 Neighboring gene Fas (TNFRSF6) binding factor 1 Neighboring gene TEN1 CST complex subunit Neighboring gene envoplakin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC108278

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acyl-CoA oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within fatty acid beta-oxidation using acyl-CoA oxidase IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    peroxisomal acyl-coenzyme A oxidase 1
    Names
    acyl-Coenzyme A oxidase 1, palmitoyl
    NP_001015762.1
    XP_012827186.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015762.1 → NP_001015762.1  peroxisomal acyl-coenzyme A oxidase 1

      See identical proteins and their annotated locations for NP_001015762.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089698
      UniProtKB/TrEMBL
      A0A6I8QUG9, F7C4L3, Q5EBF7
      Related
      ENSXETP00000027604.5, ENSXETT00000027604.5
      Conserved Domains (1) summary
      cd01150
      Location:3 → 638
      AXO; Peroxisomal acyl-CoA oxidase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      44911163..44927313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012971732.3 → XP_012827186.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QUG9, F6UF69
      Related
      ENSXETP00000027596.4, ENSXETT00000027596.5
      Conserved Domains (1) summary
      cd01150
      Location:3 → 638
      AXO; Peroxisomal acyl-CoA oxidase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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