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    CPEB1 cytoplasmic polyadenylation element binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 415326, updated on 5-Mar-2024

    Summary

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    Symbol
    CPEB1provided by CGNC
    Full Name
    cytoplasmic polyadenylation element binding protein 1provided by CGNC
    Primary source
    CGNC:1535
    See related
    Ensembl:ENSGALG00010023363
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CPEB1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (1365650..1391276, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (1239461..1265084, complement)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene beta-2-microglobulin Neighboring gene telomere repeat binding bouquet formation protein 2 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ribosomal protein S17 Neighboring gene adaptor related protein complex 3 beta 2 subunit Neighboring gene microRNA 1688 Neighboring gene uncharacterized LOC112533211

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA regulatory element binding translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation factor activity, RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of messenger ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoplasmic polyadenylation element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001293219.3 → NP_001280148.1  cytoplasmic polyadenylation element-binding protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000245
      UniProtKB/TrEMBL
      F1NY46
      Conserved Domains (4) summary
      cd12723
      Location:309 → 411
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:422 → 507
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:499 → 554
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 307
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    2. NM_001398086.1 → NP_001385015.1  cytoplasmic polyadenylation element-binding protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000245
      Conserved Domains (2) summary
      smart00360
      Location:273 → 335
      RRM; RNA recognition motif
      cd19757
      Location:470 → 510
      Bbox1; B-box-type 1 zinc finger (Bbox1)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1365650..1391276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004943630.5 → XP_004943687.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZW49
      Related
      ENSGALP00010034633.1, ENSGALT00010056953.1
      Conserved Domains (4) summary
      cd12723
      Location:309 → 416
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:427 → 512
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:504 → 559
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 307
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    2. XM_040706267.2 → XP_040562201.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

      Conserved Domains (2) summary
      smart00360
      Location:273 → 340
      RRM; RNA recognition motif
      cd19757
      Location:475 → 515
      Bbox1; B-box-type 1 zinc finger (Bbox1)

    3. XM_025153817.3 → XP_025009585.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

      Conserved Domains (4) summary
      cd12723
      Location:311 → 401
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:412 → 497
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:489 → 544
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:4 → 309
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    4. XM_025153816.3 → XP_025009584.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZML4
      Related
      ENSGALP00010034630.1, ENSGALT00010056949.1
      Conserved Domains (4) summary
      cd12723
      Location:311 → 413
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:424 → 509
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:501 → 556
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:4 → 309
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    5. XM_025153815.3 → XP_025009583.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

      Conserved Domains (4) summary
      cd12723
      Location:311 → 418
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:429 → 514
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:506 → 561
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:4 → 309
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1239461..1265084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046924688.1 → XP_046780644.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZW49

    2. XM_046924691.1 → XP_046780647.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

    3. XM_046924690.1 → XP_046780646.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

    4. XM_046924689.1 → XP_046780645.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZML4

    5. XM_046924687.1 → XP_046780643.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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