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    gmcl1 germ cell-less, spermatogenesis associated [ Danio rerio (zebrafish) ]

    Gene ID: 322146, updated on 27-Mar-2024

    Summary

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    Official Symbol
    gmcl1provided by ZNC
    Official Full Name
    germ cell-less, spermatogenesis associatedprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-865
    See related
    Ensembl:ENSDARG00000020948 AllianceGenome:ZFIN:ZDB-GENE-030131-865
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gcl; zgc:77018; wu:fb51d08
    Summary
    Predicted to act upstream of or within germ cell development. Is expressed in blastomere; ovary; and testis. Orthologous to several human genes including GMCL1 (germ cell-less 1, spermatogenesis associated). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See gmcl1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (7673446..7702029, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (7714746..7743329, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene prenylcysteine oxidase 1 Neighboring gene family with sequence similarity 136 member A Neighboring gene gamma-glutamyl carboxylase Neighboring gene sorting nexin 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Germ cell-less expression in zebrafish embryos. Li W, et al. Dev Growth Differ, 2006 Jun. PMID 16759283
    2. Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Aanes H, et al. Genome Res, 2011 Aug. PMID 21555364, Free PMC Article
    3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within germ cell development IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    germ cell-less protein-like 1
    Names
    germ cell-less homolog 1
    germ cell-less, spermatogenesis associated 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207050.1 → NP_996933.1  germ cell-less protein-like 1

      See identical proteins and their annotated locations for NP_996933.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066504
      UniProtKB/TrEMBL
      A0A8M1PKF6, Q6NYQ2
      Related
      ENSDARP00000002411.7, ENSDART00000018017.8
      Conserved Domains (3) summary
      smart00225
      Location:81 → 179
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:185 → 255
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:70 → 177
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      7673446..7702029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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