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    phf13 PHD finger protein 13 [ Danio rerio (zebrafish) ]

    Gene ID: 100537300, updated on 27-Mar-2024

    Summary

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    Official Symbol
    phf13provided by ZNC
    Official Full Name
    PHD finger protein 13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-121113-2
    See related
    Ensembl:ENSDARG00000102023 AllianceGenome:ZFIN:ZDB-GENE-121113-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human PHF13 (PHD finger protein 13). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See phf13 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (41089527..41105205)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (41756158..41771820)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene small vasohibin binding protein Neighboring gene F-box protein 2 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 11b Neighboring gene calmodulin binding transcription activator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis reveals positive selection on the divergent between topmouth culter and zebrafish. Ren L, et al. Gene, 2014 Dec 1. PMID 25267534
    2. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PHD finger protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      41089527..41105205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003201652.5 → XP_003201700.1  PHD finger protein 13

      UniProtKB/TrEMBL
      A0A0G2L648, A0A8M1RTN3
      Related
      ENSDARP00000140246.1, ENSDART00000170023.3
      Conserved Domains (1) summary
      cd15632
      Location:280 → 326
      PHD_PHF13; PHD finger found in PHD finger protein 13 (PHF13)
    Nucleotide Protein Strain
    Heading Accession and Version

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