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    TRS31 TRAPP subunit TRS31 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852083, updated on 13-Apr-2024

    Summary

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    Gene symbol
    TRS31
    Gene description
    TRAPP subunit TRS31
    Primary source
    SGD:S000002880
    Locus tag
    YDR472W
    See related
    AllianceGenome:SGD:S000002880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Contributes to guanyl-nucleotide exchange factor activity. Involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Located in cytosol. Part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (1403322..1404173)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene ribosomal 60S subunit protein L27B Neighboring gene ncRNA Neighboring gene U4/U6-U5 snRNP complex subunit PRP3 Neighboring gene Jip4p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Trs20 is required for TRAPP II assembly. Taussig D, et al. Traffic, 2013 Jun. PMID 23465091, Free PMC Article
    2. The SMS domain of Trs23p is responsible for the in vitro appearance of the TRAPP I complex in Saccharomyces cerevisiae. Brunet S, et al. Cell Logist, 2012 Jan 1. PMID 22645708, Free PMC Article
    3. The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes. Cai Y, et al. Cell, 2008 Jun 27. PMID 18585354, Free PMC Article
    4. Structural basis of TRAPPIII-mediated Rab1 activation. Joiner AM, et al. EMBO J, 2021 Jun 15. PMID 34018207, Free PMC Article
    5. Kinetic analysis of the guanine nucleotide exchange activity of TRAPP, a multimeric Ypt1p exchange factor. Chin HF, et al. J Mol Biol, 2009 Jun 5. PMID 19361519, Free PMC Article

    See all (44) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of TRAPP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of TRAPPI protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPI protein complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of TRAPPII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPII protein complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of TRAPPIII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPIII protein complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TRAPP subunit TRS31
    NP_010760.3
    • Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      1403322..1404173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180780.3 → NP_010760.3  TPA: TRAPP subunit TRS31 [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010760.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VT96, Q03337
      UniProtKB/TrEMBL
      A0A8H8UP04, A6ZZ62, C7GKR2, C8Z631, G2WBK2, N1P7L0
      Conserved Domains (1) summary
      COG5128
      Location:9 → 280
      COG5128; Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q03337.1

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