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    SETX senataxin [ Bos taurus (cattle) ]

    Gene ID: 534284, updated on 6-Jun-2024

    Summary

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    Official Symbol
    SETXprovided by VGNC
    Official Full Name
    senataxinprovided by VGNC
    Primary source
    VGNC:VGNC:34501
    See related
    Ensembl:ENSBTAG00000024822
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SETX in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (102335399..102427001, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 27 Neighboring gene uncharacterized LOC100847981 Neighboring gene netrin G2 Neighboring gene uncharacterized LOC100848025 Neighboring gene histone H2B type 2-K1-like Neighboring gene transcription termination factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription termination site sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable helicase senataxin
    XP_010808825.2
    XP_024855375.1
    XP_059747842.1
    XP_059747843.1
    XP_059747844.1
    XP_059747845.1
    XP_059747846.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      102335399..102427001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891859.1 → XP_059747842.1  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MN34

    2. XM_059891860.1 → XP_059747843.1  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MN34

    3. XM_059891862.1 → XP_059747845.1  probable helicase senataxin isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MN34

    4. XM_024999607.2 → XP_024855375.1  probable helicase senataxin isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MN34, E1BAS6
      Related
      ENSBTAP00000040529.5, ENSBTAT00000042924.5
      Conserved Domains (3) summary
      pfam13086
      Location:1944 → 2228
      AAA_11; AAA domain
      pfam13087
      Location:2236 → 2435
      AAA_12; AAA domain
      cl28181
      Location:1905 → 1970
      AAA; ATPases associated with a variety of cellular activities

    5. XM_010810523.4 → XP_010808825.2  probable helicase senataxin isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MN34, E1BAS6
      Related
      ENSBTAP00000073280.2, ENSBTAT00000069174.2
      Conserved Domains (3) summary
      pfam13086
      Location:1944 → 2228
      AAA_11; AAA domain
      pfam13087
      Location:2236 → 2435
      AAA_12; AAA domain
      cl28181
      Location:1905 → 1970
      AAA; ATPases associated with a variety of cellular activities

    6. XM_059891861.1 → XP_059747844.1  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MN34

    7. XM_059891863.1 → XP_059747846.1  probable helicase senataxin isoform X4

      UniProtKB/TrEMBL
      A0AAA9TTV3
      Related
      ENSBTAP00000100514.1, ENSBTAT00000125677.1
    Nucleotide Protein Strain
    Heading Accession and Version

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