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    CHD6 chromodomain helicase DNA binding protein 6 [ Bos taurus (cattle) ]

    Gene ID: 524776, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CHD6provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 6provided by VGNC
    Primary source
    VGNC:VGNC:27281
    See related
    Ensembl:ENSBTAG00000005733
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CHD6 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (70030877..70232258, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene lipin 3 Neighboring gene elastin microfibril interfacer 3 Neighboring gene microRNA mir-544b-1 Neighboring gene uncharacterized LOC132346860 Neighboring gene uncharacterized LOC112449381

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 6
    NP_001230229.1
    XP_024856392.1
    XP_024856393.1
    XP_024856394.1
    XP_024856396.1
    XP_059748602.1
    XP_059748603.1
    XP_059748604.1
    XP_059748605.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243300.1 → NP_001230229.1  chromodomain-helicase-DNA-binding protein 6

      Status: VALIDATED

      Source sequence(s)
      BC126831, NKLS02000013
      UniProtKB/TrEMBL
      F1N734
      Related
      ENSBTAP00000053689.3, ENSBTAT00000061177.4
      Conserved Domains (5) summary
      pfam00385
      Location:375 → 429
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam10243
      Location:111 → 232
      MIP-T3; Microtubule-binding protein MIP-T3
      cl25751
      Location:106 → 373
      DUF4045; Domain of unknown function (DUF4045)
      cl26464
      Location:2322 → 2712
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:460 → 985
      SNF2_N; SNF2 family N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      70030877..70232258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000625.2 → XP_024856393.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734
      Conserved Domains (5) summary
      pfam00385
      Location:375 → 429
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam10243
      Location:111 → 232
      MIP-T3; Microtubule-binding protein MIP-T3
      cl25751
      Location:106 → 373
      DUF4045; Domain of unknown function (DUF4045)
      cl26464
      Location:2322 → 2712
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:460 → 985
      SNF2_N; SNF2 family N-terminal domain

    2. XM_059892619.1 → XP_059748602.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734

    3. XM_059892620.1 → XP_059748603.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734

    4. XM_025000626.2 → XP_024856394.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734
      Conserved Domains (5) summary
      pfam00385
      Location:375 → 429
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam10243
      Location:111 → 232
      MIP-T3; Microtubule-binding protein MIP-T3
      cl25751
      Location:106 → 373
      DUF4045; Domain of unknown function (DUF4045)
      cl26464
      Location:2322 → 2712
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:460 → 985
      SNF2_N; SNF2 family N-terminal domain

    5. XM_059892621.1 → XP_059748604.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734

    6. XM_025000624.2 → XP_024856392.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F1N734
      Conserved Domains (5) summary
      pfam00385
      Location:375 → 429
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam10243
      Location:111 → 232
      MIP-T3; Microtubule-binding protein MIP-T3
      cl25751
      Location:106 → 373
      DUF4045; Domain of unknown function (DUF4045)
      cl26464
      Location:2322 → 2712
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:460 → 985
      SNF2_N; SNF2 family N-terminal domain

    7. XM_025000628.2 → XP_024856396.1  chromodomain-helicase-DNA-binding protein 6 isoform X2

      Conserved Domains (5) summary
      cd00024
      Location:272 → 332
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:353 → 407
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam10243
      Location:89 → 210
      MIP-T3; Microtubule-binding protein MIP-T3
      cl26464
      Location:2300 → 2690
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:438 → 963
      SNF2_N; SNF2 family N-terminal domain

    8. XM_059892622.1 → XP_059748605.1  chromodomain-helicase-DNA-binding protein 6 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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