NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss93653642           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-2290728
RefSNP(rs#)rs1004317
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=A|Alt=G|Chr=chr7|Position=30923383|Strand=+|dbSNP=+|Score=86|Reads=4:4:9

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss93653642|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TGTGCTTAGG TTTCTGGATC TGGGGCTGGA GAGTGACCAC CCCGATGTGA GGCAGGAGGC
 ACTTTTGGAG ACTGCGGGGG CTCGAATCTG GGCCAAGGCC TCCATTTTAC TGATGGGGAA
 ACTGAAGCCC ACAGAGGCGT GGAGACTTGT CAAGGTGGCA CTGCCTCCTA GCCCTTGATT
 ATTCCTGCTG CTCCAAAGTG TACACACATG GCACAAACAC AAACATGCAC ACACATGTGC
 TCTTACGTGG
 R
 GGACACACAC ACATGGTACA CAAAGCACAT TCTCAAGACT GGGTGGTCCC ACTCAGACTC
 TGGGACCCAA GGAGGGTTGG GCGGGGATTC CTCAATGGAG CCTTTTCCTC TCCCTGCCCT
 GGAGTTAGGA AAAGAAGGAG GGAGGGAGGG AGGAAGCCAT TGCTTTGTGT ATTGTTTCTT
 GTCAGGAAGA TGAAATGGCT TCTGGGAGCA AATAAAGGCC TTGTTGAGAC CTGCTGCTTT
 CTCACATGGG

  Submitted Frequency for ss93653642 back to top
There is no frequency submission for ss93653642.


  dbSNP summary of Genotypes for ss93653642 back to top
No sufficient data to compute Hardy-weinberg probability for ss93653642.


  Submitted individual genotype for ss93653642 back to top
There is no individual genotype data for ss93653642.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement