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dbSNP Summary
RELEASE: NCBI dbSNP Build 135

dbSNP Component Availability Dates:

Component Date available
dbSNP web query for build 135: Oct 13, 2011
ftp data for build 135: Nov 03, 2011
Entrez Indexing for build 135: Oct 28, 2011
BLAST database for build 135: Nov 14, 2011

-  The complete data for build 135 are available at ftp://ftp.ncbi.nih.gov/snp/ in multiple formats.
-  All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.

-  Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.

New Submission since previous build:
Organism Current
Build		 New Submissions
(ss#'s)		 New RefSNP Clusters
(rs#'s) ( # validated)		 New ss# with
Genotype		 New ss# with
Frequency
Homo sapiens 135167,019 12,632,873 (12,539,846) 125
Pongo abelii 1368,866,024 8,705,490 (0)
Pongo pygmaeus 1277,854,083 7,854,081 (0)
Gallus gallus 1317,676,132 221,600 (0) 50
Glycine max 12749,402 6,351,756 (0)
Rattus norvegicus 1366,295,806 (0)
Phoenix dactylifera 1333,518,029 3,429,753 (0)
Oryza sativa 128 200 (0)
Bos taurus 1312,446,173 74 (0) 77
Zea mays 128 766 (0)
Canis familiaris 131 200 (0)
Ovis aries 128 15,521 (0)
Pan troglodytes 1367 7 (0)
Anopheles gambiae 128 492,741 (0)
Taeniopygia guttata 1311,750,282 (0)
Danio rerio 136665,456 (0)
Coccidioides immitis 132722,820 722,724 (0)
Trypanosoma cruzi 132738,077 695,019 (0)
Equus caballus 130165 (0)
Tetraodon nigroviridis 132 903,110 (0)
Macaca mulatta 13630,275 (0)
Apis mellifera 1281,861 (0)
Sus scrofa 136159 13,649 (0) 10
Caenorhabditis elegans 136280 223 (0)
Plasmodium falciparum 12768,710 30,800 (0)
Pseudomonas aeruginosa 132121,819 121,807 (0)
Mycobacterium tuberculosis 13278,981 40,283 (0)
Lodderomyces elongisporus 132 72,880 (0)
Artemisia tridentata 13221,170 20,687 (0)
Amaranthus caudatus 132 26,101 (0)
Staphylococcus aureus 12920,377 18,000 (0)
Candida tropicalis 132 24,759 (0)
Salmo salar 1287,687 7,291 (0)
Fusarium graminearum 129 224 (0)
Meleagris gallopavo 132384 9,256 (0)
Streptococcus pyogenes 1324,790 4,790 (0)
Gadus morhua 1321,776 2,140 (0) 1,694
Pisum sativum 1321,677 1,672 (0)
Litopenaeus vannamei 132 2,000 (0)
Pinus pinaster 126317 286 (0)
Gasterosteus aculeatus 132 828 (0)
Oncorhynchus mykiss 128 81 (0)
Candida parapsilosis 132 841 (0)
Oncorhynchus tshawytscha 126118 118 (0)
Phytophthora capsici 132349 360 (0)
Bubalus bubalis 13223 23 (0)
Bos indicus 132223 223 (0) 223
Solanum lycopersicum 12929 376 (0)
Anopheles funestus 126 354 (0)
Ficedula albicollis 126 240 (0)
Oreochromis niloticus 12767 67 (0)
Heterodera glycines 129 244 (0)
Hypocrea jecorina 132 238 (0)
Ficedula hypoleuca 126 210 (0)
Oncorhynchus keta 127 212 (0)
Daphnia magna 132139 139 (0)
Oncorhynchus nerka 12779 79 (0)
Salmonella enterica 131 2 (0)
Bos sp. 13236 32 (0) 36
Oncorhynchus clarkii 132 117 (0)
Prunus dulcis 132 109 (0)
Capra hircus 12966 65 (0)
Cervus elaphus nelsoni 13212 60 (0) 46
Alectoris 132 91 (0)
Oncorhynchus kisutch 12735 35 (0)
Oryza rufipogon 132 70 (0)
Psetta maxima 13240 40 (0)
Zostera marina 129 51 (0)
Malus x domestica 132 50 (0)
Agelaius phoeniceus 126 47 (0)
Oryza nivara 132 47 (0)
Candidatus Liberibacter solanacearum 13211 29 (0)
Alectoris rufa 132 24 (0)
Musa acuminata 13217 17 (0)
Medicago truncatula 129 2 (0)
Parus major 132 18 (0)
Corynespora cassiicola 132 9 (0)
Musa balbisiana 1329 9 (0)
Coptotermes gestroi 132 11 (0)
Schistosoma mansoni 127 8 (0)
Mus spretus 126 4 (0)
Gorilla gorilla 1273 3 (0)
Alectoris chukar 132 5 (0)
Musa AAB group 1323 3 (0)
Coturnix coturnix 132 3 (0)
Eulemur fulvus 132 1 (0)
Total: 86 Organisms 41,110,997 42,428,358 (12,539,846) 2,261


*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.

BUILD STATISTICS:
Organism dbSNP
Build		 Genome
Build		 Number of
Submissions
(ss#'s)		 Number of
RefSNP Clusters
(rs#'s) ( # validated)		 Number of
(rs#'s)
in gene		 Number of
(ss#'s)
with
genotype		 Number of
(ss#'s)
with
frequency
Homo sapiens 135 37.3178,140,935 52,327,221 (41,740,143) 21,247,880 35,627,584
Mus musculus 132 37.126,991,031 15,522,011 (6,439,098) 6,696,618
Pongo abelii 136 100.010,225,850 10,065,309 (0)
Pongo pygmaeus 127 7,854,083 7,854,081 (0)
Gallus gallus 131 2.111,318,097 3,504,588 (3,269,983) 1,452,147 50
Glycine max 127 6,378,350 6,352,034 (234)
Rattus norvegicus 136 101.06,472,989 119,436 (1,605) 1,024,738
Phoenix dactylifera 133 3,518,029 3,429,753 (0)
Oryza sativa 128 4.15,872,306 5,359,569 (21,773) 1,897,895
Bos taurus 131 4.14,931,454 2,210,557 (13,881) 677,906 446
Zea mays 128 4,556,997 4,351,393 (80)
Canis familiaris 131 2.13,527,071 3,258,962 (214,713) 982,946 17
Ovis aries 128 2,914,809 2,914,736 (66) 91
Pan troglodytes 136 101.01,707,774 1,661,399 (112,479) 589,664 2
Anopheles gambiae 128 2.21,868,765 1,630,062 (0)
Ornithorhynchus anatinus 130 1.11,883,034 1,319,269 (0) 335,055
Taeniopygia guttata 131 1,751,580 (0)
Danio rerio 136 102.01,366,311 662,322 (4,719) 398,819
Coccidioides immitis 132 722,820 722,724 (0)
Trypanosoma cruzi 132 738,077 695,019 (0)
Equus caballus 130 2.11,163,745 1,163,580 (0) 382,835 9
Tetraodon nigroviridis 132 903,588 903,110 (0)
Monodelphis domestica 128 2.11,196,103 1,194,131 (0) 287,496
Macaca mulatta 136 101.02,307,229 8,134 (519) 512 8,072
Apis mellifera 128 4.11,120,053 1,117,049 (16) 69,462
Sus scrofa 136 103.0557,135 528,319 (21) 149
Vitis vinifera 129 470,838 470,835 (0) 88
Caenorhabditis elegans 136 101.0348,437 331,436 (0)
Felis catus 127 1.1327,037 327,037 (0)
Plasmodium falciparum 127 253,781 156,289 (47)
Pseudomonas aeruginosa 132 121,855 121,843 (0)
Mycobacterium tuberculosis 132 79,037 40,308 (0)
Lodderomyces elongisporus 132 72,880 72,880 (0)
Candida albicans 131 103,257 (0)
Saccharum hybrid cultivar 126 42,853 42,853 (0)
Artemisia tridentata 132 21,170 20,687 (0)
Amaranthus caudatus 132 27,658 26,101 (0)
Staphylococcus aureus 129 20,378 18,001 (0)
Candida tropicalis 132 24,759 24,759 (0)
Caenorhabditis briggsae 129 34,403 (0)
Salmo salar 128 9,031 8,635 (0) 10
Fusarium graminearum 129 20,801 10,709 (0)
Meleagris gallopavo 132 9,259 9,256 (0)
Drosophila melanogaster 131 9.227,377 11 (0)
Streptococcus pyogenes 132 8,696 8,696 (0)
Gadus morhua 132 2,140 2,140 (0) 1,727
Pisum sativum 132 1,677 1,672 (0)
Litopenaeus vannamei 132 1,384 2,000 (0)
Bos indicus x Bos taurus 128 3.12,445 2,486 (42) 137 2
Pinus pinaster 126 1,953 1,884 (0) 193
Gasterosteus aculeatus 132 1,644 1,644 (0)
Oncorhynchus mykiss 128 1,089 1,086 (0) 304
Candida parapsilosis 132 841 841 (0)
Oncorhynchus tshawytscha 126 817 813 (0) 52
Phytophthora capsici 132 360 360 (0)
Bubalus bubalis 132 505 500 (0) 363
Cooperia oncophora 126 426 426 (96) 425
Bos indicus 132 223 223 (0) 223
Solanum lycopersicum 129 433 376 (0)
Anopheles funestus 126 354 354 (0)
Ficedula albicollis 126 277 277 (15) 37
Arabidopsis thaliana 136 101.0301 301 (184)
Oreochromis niloticus 127 321 321 (0)
Heterodera glycines 129 248 244 (0)
Hypocrea jecorina 132 238 238 (0)
Ficedula hypoleuca 126 230 230 (10) 28
Oncorhynchus keta 127 212 212 (0)
Daphnia magna 132 139 139 (0)
Oncorhynchus nerka 127 197 197 (0)
Macaca fascicularis 131 1.1153 152 (0) 82 153
Salmonella enterica 131 250 249 (0)
Bos sp. 132 124 120 (0) 124
Oncorhynchus clarkii 132 117 117 (0)
Prunus dulcis 132 109 109 (0)
Capra hircus 129 94 93 (0)
Cervus elaphus nelsoni 132 61 60 (0) 75
Alectoris 132 91 91 (0)
Oncorhynchus kisutch 127 75 75 (0)
Oryza rufipogon 132 70 70 (0)
Psetta maxima 132 40 40 (0)
Zostera marina 129 51 51 (0)
Malus x domestica 132 51 50 (0)
Agelaius phoeniceus 126 47 47 (0)
Oryza nivara 132 47 47 (0)
Candidatus Liberibacter solanacearum 132 30 29 (0)
Allium cepa 127 45 50 (0)
Alectoris rufa 132 24 24 (0)
Musa acuminata 132 17 17 (0)
Medicago truncatula 129 29 29 (0)
Parus major 132 18 18 (0)
Corynespora cassiicola 132 9 9 (0) 9
Musa balbisiana 132 9 9 (0)
Coptotermes gestroi 132 11 11 (0)
Schistosoma mansoni 127 8 8 (0) 2
Bison bison 128 3.16 6 (2) 2 6
Mus spretus 126 4 4 (0) 4
Gorilla gorilla 127 5 5 (0)
Hydroides elegans 126 8 7 (1)
Alectoris chukar 132 5 5 (0)
Musa AAB group 132 3 3 (0)
Coturnix coturnix 132 3 3 (0)
Eulemur fulvus 132 1 1 (0)
Total: 102 Organisms 18
genomes		 292,031,791 130,585,677 (51,819,727) 36,044,194 35,640,245



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