RELEASE: NCBI dbSNP Build 135
dbSNP Component Availability Dates:
| Component | Date available | |
| dbSNP web query for build 135: | Oct 13, 2011 | | ftp data for build 135: | Nov 03, 2011 | | Entrez Indexing for build 135: | Oct 28, 2011 | | BLAST database for build 135: | Nov 14, 2011 |
- The complete data for
build 135 are available at ftp://ftp.ncbi.nih.gov/snp/
in multiple formats. - All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.
- Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.
New Submission since previous build:
| Organism | Current Build | New Submissions (ss#'s) | New RefSNP Clusters (rs#'s) ( # validated) | New ss# with Genotype | New ss# with Frequency | | Homo sapiens | 135 | 167,019 | 12,632,873 (12,539,846) | | 125 | | Pongo abelii | 136 | 8,866,024 | 8,705,490 (0) | | | | Pongo pygmaeus | 127 | 7,854,083 | 7,854,081 (0) | | | | Gallus gallus | 131 | 7,676,132 | 221,600 (0) | | 50 | | Glycine max | 127 | 49,402 | 6,351,756 (0) | | | | Rattus norvegicus | 136 | 6,295,806 | (0) | | | | Phoenix dactylifera | 133 | 3,518,029 | 3,429,753 (0) | | | | Oryza sativa | 128 | | 200 (0) | | | | Bos taurus | 131 | 2,446,173 | 74 (0) | | 77 | | Zea mays | 128 | | 766 (0) | | | | Canis familiaris | 131 | | 200 (0) | | | | Ovis aries | 128 | | 15,521 (0) | | | | Pan troglodytes | 136 | 7 | 7 (0) | | | | Anopheles gambiae | 128 | | 492,741 (0) | | | | Taeniopygia guttata | 131 | 1,750,282 | (0) | | | | Danio rerio | 136 | 665,456 | (0) | | | | Coccidioides immitis | 132 | 722,820 | 722,724 (0) | | | | Trypanosoma cruzi | 132 | 738,077 | 695,019 (0) | | | | Equus caballus | 130 | 165 | (0) | | | | Tetraodon nigroviridis | 132 | | 903,110 (0) | | | | Macaca mulatta | 136 | 30,275 | (0) | | | | Apis mellifera | 128 | 1,861 | (0) | | | | Sus scrofa | 136 | 159 | 13,649 (0) | | 10 | | Caenorhabditis elegans | 136 | 280 | 223 (0) | | | | Plasmodium falciparum | 127 | 68,710 | 30,800 (0) | | | | Pseudomonas aeruginosa | 132 | 121,819 | 121,807 (0) | | | | Mycobacterium tuberculosis | 132 | 78,981 | 40,283 (0) | | | | Lodderomyces elongisporus | 132 | | 72,880 (0) | | | | Artemisia tridentata | 132 | 21,170 | 20,687 (0) | | | | Amaranthus caudatus | 132 | | 26,101 (0) | | | | Staphylococcus aureus | 129 | 20,377 | 18,000 (0) | | | | Candida tropicalis | 132 | | 24,759 (0) | | | | Salmo salar | 128 | 7,687 | 7,291 (0) | | | | Fusarium graminearum | 129 | | 224 (0) | | | | Meleagris gallopavo | 132 | 384 | 9,256 (0) | | | | Streptococcus pyogenes | 132 | 4,790 | 4,790 (0) | | | | Gadus morhua | 132 | 1,776 | 2,140 (0) | | 1,694 | | Pisum sativum | 132 | 1,677 | 1,672 (0) | | | | Litopenaeus vannamei | 132 | | 2,000 (0) | | | | Pinus pinaster | 126 | 317 | 286 (0) | | | | Gasterosteus aculeatus | 132 | | 828 (0) | | | | Oncorhynchus mykiss | 128 | | 81 (0) | | | | Candida parapsilosis | 132 | | 841 (0) | | | | Oncorhynchus tshawytscha | 126 | 118 | 118 (0) | | | | Phytophthora capsici | 132 | 349 | 360 (0) | | | | Bubalus bubalis | 132 | 23 | 23 (0) | | | | Bos indicus | 132 | 223 | 223 (0) | | 223 | | Solanum lycopersicum | 129 | 29 | 376 (0) | | | | Anopheles funestus | 126 | | 354 (0) | | | | Ficedula albicollis | 126 | | 240 (0) | | | | Oreochromis niloticus | 127 | 67 | 67 (0) | | | | Heterodera glycines | 129 | | 244 (0) | | | | Hypocrea jecorina | 132 | | 238 (0) | | | | Ficedula hypoleuca | 126 | | 210 (0) | | | | Oncorhynchus keta | 127 | | 212 (0) | | | | Daphnia magna | 132 | 139 | 139 (0) | | | | Oncorhynchus nerka | 127 | 79 | 79 (0) | | | | Salmonella enterica | 131 | | 2 (0) | | | | Bos sp. | 132 | 36 | 32 (0) | | 36 | | Oncorhynchus clarkii | 132 | | 117 (0) | | | | Prunus dulcis | 132 | | 109 (0) | | | | Capra hircus | 129 | 66 | 65 (0) | | | | Cervus elaphus nelsoni | 132 | 12 | 60 (0) | | 46 | | Alectoris | 132 | | 91 (0) | | | | Oncorhynchus kisutch | 127 | 35 | 35 (0) | | | | Oryza rufipogon | 132 | | 70 (0) | | | | Psetta maxima | 132 | 40 | 40 (0) | | | | Zostera marina | 129 | | 51 (0) | | | | Malus x domestica | 132 | | 50 (0) | | | | Agelaius phoeniceus | 126 | | 47 (0) | | | | Oryza nivara | 132 | | 47 (0) | | | | Candidatus Liberibacter solanacearum | 132 | 11 | 29 (0) | | | | Alectoris rufa | 132 | | 24 (0) | | | | Musa acuminata | 132 | 17 | 17 (0) | | | | Medicago truncatula | 129 | | 2 (0) | | | | Parus major | 132 | | 18 (0) | | | | Corynespora cassiicola | 132 | | 9 (0) | | | | Musa balbisiana | 132 | 9 | 9 (0) | | | | Coptotermes gestroi | 132 | | 11 (0) | | | | Schistosoma mansoni | 127 | | 8 (0) | | | | Mus spretus | 126 | | 4 (0) | | | | Gorilla gorilla | 127 | 3 | 3 (0) | | | | Alectoris chukar | 132 | | 5 (0) | | | | Musa AAB group | 132 | 3 | 3 (0) | | | | Coturnix coturnix | 132 | | 3 (0) | | | | Eulemur fulvus | 132 | | 1 (0) | | | | Total: 86 Organisms | | 41,110,997 | 42,428,358 (12,539,846) | | 2,261 |
*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.
BUILD STATISTICS:
| Organism | dbSNP Build | Genome Build | Number of Submissions (ss#'s) | Number of RefSNP Clusters (rs#'s) ( # validated) | Number of (rs#'s) in gene | Number of (ss#'s) with genotype | Number of (ss#'s) with frequency | | Homo sapiens | 135 | 37.3 | 178,140,935 | 52,327,221 (41,740,143) | 21,247,880 | | 35,627,584 | | Mus musculus | 132 | 37.1 | 26,991,031 | 15,522,011 (6,439,098) | 6,696,618 | | | | Pongo abelii | 136 | 100.0 | 10,225,850 | 10,065,309 (0) | | | | | Pongo pygmaeus | 127 | | 7,854,083 | 7,854,081 (0) | | | | | Gallus gallus | 131 | 2.1 | 11,318,097 | 3,504,588 (3,269,983) | 1,452,147 | | 50 | | Glycine max | 127 | | 6,378,350 | 6,352,034 (234) | | | | | Rattus norvegicus | 136 | 101.0 | 6,472,989 | 119,436 (1,605) | 1,024,738 | | | | Phoenix dactylifera | 133 | | 3,518,029 | 3,429,753 (0) | | | | | Oryza sativa | 128 | 4.1 | 5,872,306 | 5,359,569 (21,773) | 1,897,895 | | | | Bos taurus | 131 | 4.1 | 4,931,454 | 2,210,557 (13,881) | 677,906 | | 446 | | Zea mays | 128 | | 4,556,997 | 4,351,393 (80) | | | | | Canis familiaris | 131 | 2.1 | 3,527,071 | 3,258,962 (214,713) | 982,946 | | 17 | | Ovis aries | 128 | | 2,914,809 | 2,914,736 (66) | | | 91 | | Pan troglodytes | 136 | 101.0 | 1,707,774 | 1,661,399 (112,479) | 589,664 | | 2 | | Anopheles gambiae | 128 | 2.2 | 1,868,765 | 1,630,062 (0) | | | | | Ornithorhynchus anatinus | 130 | 1.1 | 1,883,034 | 1,319,269 (0) | 335,055 | | | | Taeniopygia guttata | 131 | | 1,751,580 | (0) | | | | | Danio rerio | 136 | 102.0 | 1,366,311 | 662,322 (4,719) | 398,819 | | | | Coccidioides immitis | 132 | | 722,820 | 722,724 (0) | | | | | Trypanosoma cruzi | 132 | | 738,077 | 695,019 (0) | | | | | Equus caballus | 130 | 2.1 | 1,163,745 | 1,163,580 (0) | 382,835 | | 9 | | Tetraodon nigroviridis | 132 | | 903,588 | 903,110 (0) | | | | | Monodelphis domestica | 128 | 2.1 | 1,196,103 | 1,194,131 (0) | 287,496 | | | | Macaca mulatta | 136 | 101.0 | 2,307,229 | 8,134 (519) | 512 | | 8,072 | | Apis mellifera | 128 | 4.1 | 1,120,053 | 1,117,049 (16) | 69,462 | | | | Sus scrofa | 136 | 103.0 | 557,135 | 528,319 (21) | | | 149 | | Vitis vinifera | 129 | | 470,838 | 470,835 (0) | | | 88 | | Caenorhabditis elegans | 136 | 101.0 | 348,437 | 331,436 (0) | | | | | Felis catus | 127 | 1.1 | 327,037 | 327,037 (0) | | | | | Plasmodium falciparum | 127 | | 253,781 | 156,289 (47) | | | | | Pseudomonas aeruginosa | 132 | | 121,855 | 121,843 (0) | | | | | Mycobacterium tuberculosis | 132 | | 79,037 | 40,308 (0) | | | | | Lodderomyces elongisporus | 132 | | 72,880 | 72,880 (0) | | | | | Candida albicans | 131 | | 103,257 | (0) | | | | | Saccharum hybrid cultivar | 126 | | 42,853 | 42,853 (0) | | | | | Artemisia tridentata | 132 | | 21,170 | 20,687 (0) | | | | | Amaranthus caudatus | 132 | | 27,658 | 26,101 (0) | | | | | Staphylococcus aureus | 129 | | 20,378 | 18,001 (0) | | | | | Candida tropicalis | 132 | | 24,759 | 24,759 (0) | | | | | Caenorhabditis briggsae | 129 | | 34,403 | (0) | | | | | Salmo salar | 128 | | 9,031 | 8,635 (0) | | | 10 | | Fusarium graminearum | 129 | | 20,801 | 10,709 (0) | | | | | Meleagris gallopavo | 132 | | 9,259 | 9,256 (0) | | | | | Drosophila melanogaster | 131 | 9.2 | 27,377 | 11 (0) | | | | | Streptococcus pyogenes | 132 | | 8,696 | 8,696 (0) | | | | | Gadus morhua | 132 | | 2,140 | 2,140 (0) | | | 1,727 | | Pisum sativum | 132 | | 1,677 | 1,672 (0) | | | | | Litopenaeus vannamei | 132 | | 1,384 | 2,000 (0) | | | | | Bos indicus x Bos taurus | 128 | 3.1 | 2,445 | 2,486 (42) | 137 | | 2 | | Pinus pinaster | 126 | | 1,953 | 1,884 (0) | | | 193 | | Gasterosteus aculeatus | 132 | | 1,644 | 1,644 (0) | | | | | Oncorhynchus mykiss | 128 | | 1,089 | 1,086 (0) | | | 304 | | Candida parapsilosis | 132 | | 841 | 841 (0) | | | | | Oncorhynchus tshawytscha | 126 | | 817 | 813 (0) | | | 52 | | Phytophthora capsici | 132 | | 360 | 360 (0) | | | | | Bubalus bubalis | 132 | | 505 | 500 (0) | | | 363 | | Cooperia oncophora | 126 | | 426 | 426 (96) | | | 425 | | Bos indicus | 132 | | 223 | 223 (0) | | | 223 | | Solanum lycopersicum | 129 | | 433 | 376 (0) | | | | | Anopheles funestus | 126 | | 354 | 354 (0) | | | | | Ficedula albicollis | 126 | | 277 | 277 (15) | | | 37 | | Arabidopsis thaliana | 136 | 101.0 | 301 | 301 (184) | | | | | Oreochromis niloticus | 127 | | 321 | 321 (0) | | | | | Heterodera glycines | 129 | | 248 | 244 (0) | | | | | Hypocrea jecorina | 132 | | 238 | 238 (0) | | | | | Ficedula hypoleuca | 126 | | 230 | 230 (10) | | | 28 | | Oncorhynchus keta | 127 | | 212 | 212 (0) | | | | | Daphnia magna | 132 | | 139 | 139 (0) | | | | | Oncorhynchus nerka | 127 | | 197 | 197 (0) | | | | | Macaca fascicularis | 131 | 1.1 | 153 | 152 (0) | 82 | | 153 | | Salmonella enterica | 131 | | 250 | 249 (0) | | | | | Bos sp. | 132 | | 124 | 120 (0) | | | 124 | | Oncorhynchus clarkii | 132 | | 117 | 117 (0) | | | | | Prunus dulcis | 132 | | 109 | 109 (0) | | | | | Capra hircus | 129 | | 94 | 93 (0) | | | | | Cervus elaphus nelsoni | 132 | | 61 | 60 (0) | | | 75 | | Alectoris | 132 | | 91 | 91 (0) | | | | | Oncorhynchus kisutch | 127 | | 75 | 75 (0) | | | | | Oryza rufipogon | 132 | | 70 | 70 (0) | | | | | Psetta maxima | 132 | | 40 | 40 (0) | | | | | Zostera marina | 129 | | 51 | 51 (0) | | | | | Malus x domestica | 132 | | 51 | 50 (0) | | | | | Agelaius phoeniceus | 126 | | 47 | 47 (0) | | | | | Oryza nivara | 132 | | 47 | 47 (0) | | | | | Candidatus Liberibacter solanacearum | 132 | | 30 | 29 (0) | | | | | Allium cepa | 127 | | 45 | 50 (0) | | | | | Alectoris rufa | 132 | | 24 | 24 (0) | | | | | Musa acuminata | 132 | | 17 | 17 (0) | | | | | Medicago truncatula | 129 | | 29 | 29 (0) | | | | | Parus major | 132 | | 18 | 18 (0) | | | | | Corynespora cassiicola | 132 | | 9 | 9 (0) | | | 9 | | Musa balbisiana | 132 | | 9 | 9 (0) | | | | | Coptotermes gestroi | 132 | | 11 | 11 (0) | | | | | Schistosoma mansoni | 127 | | 8 | 8 (0) | | | 2 | | Bison bison | 128 | 3.1 | 6 | 6 (2) | 2 | | 6 | | Mus spretus | 126 | | 4 | 4 (0) | | | 4 | | Gorilla gorilla | 127 | | 5 | 5 (0) | | | | | Hydroides elegans | 126 | | 8 | 7 (1) | | | | | Alectoris chukar | 132 | | 5 | 5 (0) | | | | | Musa AAB group | 132 | | 3 | 3 (0) | | | | | Coturnix coturnix | 132 | | 3 | 3 (0) | | | | | Eulemur fulvus | 132 | | 1 | 1 (0) | | | | | Total: 102 Organisms | | 18 genomes | 292,031,791 | 130,585,677 (51,819,727) | 36,044,194 | | 35,640,245 |
See summary for past builds:
|