RELEASE: NCBI dbSNP Build 130
dbSNP Component Availability Dates:
| Component | Date available |
|---|
|
| dbSNP web query for build 130: | Apr 30, 2009 | | ftp data for build 130: | May 03, 2009 | | Entrez Indexing for build 130: | May 03, 2009 | | BLAST database for build 130: | May 03, 2009 |
- The complete data for
build 130 are available at ftp://ftp.ncbi.nih.gov/snp/
in multiple formats.
- All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.
- Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.
New Submission since previous build:
| Organism | Current
Build | New Submissions
(ss#'s) | New RefSNP Clusters
(rs#'s) ( # validated) | New ss# with
Genotype | New ss# with
Frequency |
|---|
| Homo sapiens | 130 | 12,878,918 | 3 (0) | | 368 | | Mus musculus | 128 | 8,007,812 | (0) | | | | Gallus gallus | 128 | 1 | (0) | | | | Bos taurus | 130 | 2,444,367 | (0) | | 38 | | Anopheles gambiae | 128 | 3 | (0) | | | | Sus scrofa | 128 | 373,404 | (0) | | | | Plasmodium falciparum | 127 | 68,710 | (0) | | | | Oncorhynchus mykiss | 128 | 183 | (0) | | | | Oncorhynchus tshawytscha | 126 | 18 | (0) | | | | Mus spretus | 126 | 4 | (0) | | 4 | | Total: 10 Organisms | | 23,773,420 | 3 () | | 410 |
*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.
BUILD STATISTICS:
| Organism | dbSNP
Build | Genome
Build | Number of
Submissions
(ss#'s) | Number of
RefSNP Clusters
(rs#'s) ( # validated) | Number of
(rs#'s)
in gene | Number of
(ss#'s)
with
genotype | Number of
(ss#'s)
with
frequency |
|---|
| Homo sapiens | 130 | 36.3 | 92,364,155 | 17,804,036 (9,468,384) | 7,344,853 | | 803,969 | | Mus musculus | 128 | 37.1 | 26,675,134 | 14,380,528 (6,447,366) | 5,878,592 | | | | Oryza sativa | 128 | 4.1 | 5,872,306 | 5,418,373 (22,057) | 1,897,895 | | | | Rattus norvegicus | 130 | 4.1 | 2,755,176 | 2,743,905 (1,605) | 1,024,738 | | | | Gallus gallus | 128 | 2.1 | 3,641,966 | 3,293,383 (3,280,002) | 1,452,147 | | | | Bos taurus | 130 | 4.1 | 4,929,649 | 2,210,483 (13,881) | 677,906 | | 407 | | Canis familiaris | 126 | 2.1 | 3,527,071 | 3,301,322 (217,525) | 982,946 | | 17 | | Ornithorhynchus anatinus | 130 | 1.1 | 1,883,034 | 1,319,269 (0) | 335,055 | | | | Equus caballus | 130 | 2.1 | 1,163,580 | 1,163,580 (0) | 382,835 | | 9 | | Pan troglodytes | 127 | 2.1 | 1,544,900 | 1,543,208 (112,654) | 527,665 | | 2 | | Danio rerio | 130 | 3.1 | 700,855 | 662,322 (4,719) | 398,819 | | | | Monodelphis domestica | 128 | 2.1 | 1,196,103 | 1,194,131 (0) | 287,496 | | | | Anopheles gambiae | 128 | 2.2 | 1,375,834 | 1,131,534 (0) | | | | | Apis mellifera | 128 | 4.1 | 1,118,192 | 1,117,049 (16) | 69,462 | | | | Sus scrofa | 128 | 1.1 | 541,144 | 8,427 (24) | | | 139 | | Felis catus | 127 | 1.1 | 327,037 | 327,037 (0) | | | | | Plasmodium falciparum | 127 | | 253,781 | 185,071 (47) | | | | | Saccharum hybrid cultivar | 126 | | 42,853 | 42,853 (0) | | | | | Caenorhabditis briggsae | 129 | | 34,403 | (0) | | | | | Drosophila melanogaster | 128 | 8.3 | 27,377 | 11 (0) | | | | | Glycine max | 127 | | 18,873 | 278 (234) | | | | | Fusarium graminearum | 129 | | 10,493 | (0) | | | | | Zea mays | 128 | | 4,932 | 4,932 (80) | | | | | Ovis aries | 128 | | 4,629 | 4,181 (66) | | | 59 | | Bos indicus x Bos taurus | 128 | 3.1 | 2,445 | 2,486 (42) | 137 | | 2 | | Macaca mulatta | 128 | 1.1 | 1,237 | 780 (519) | 601 | | 1,148 | | Caenorhabditis elegans | 128 | 7.1 | 1,065 | 1,065 (0) | | | | | Salmo salar | 128 | | 1,172 | 755 (0) | | | 10 | | Arabidopsis thaliana | 130 | 7.1 | 301 | 301 (184) | | | | | Oncorhynchus mykiss | 128 | | 632 | 400 (0) | | | 304 | | Pinus pinaster | 126 | | 1,439 | 32 (0) | | | | | Cooperia oncophora | 126 | | 426 | 426 (96) | | | 425 | | Vitis vinifera | 129 | | 1,029 | (0) | | | 88 | | Oncorhynchus tshawytscha | 126 | | 699 | (0) | | | 52 | | Macaca fascicularis | 128 | 1.1 | 153 | 114 (0) | | | 153 | | Solanum lycopersicum | 129 | | 404 | (0) | | | | | Anopheles funestus | 126 | | 354 | (0) | | | | | Heterodera glycines | 129 | | 248 | (0) | | | | | Oncorhynchus keta | 127 | | 212 | (0) | | | | | Ficedula albicollis | 126 | | 83 | 37 (15) | | | 37 | | Oncorhynchus nerka | 127 | | 118 | (0) | | | | | Allium cepa | 127 | | 45 | 50 (0) | | | | | Ficedula hypoleuca | 126 | | 28 | 20 (10) | | | 28 | | Zostera marina | 129 | | 51 | (0) | | | | | Agelaius phoeniceus | 126 | | 47 | (0) | | | | | Oncorhynchus kisutch | 127 | | 40 | (0) | | | | | Capra hircus | 129 | | 28 | (0) | | | | | Medicago truncatula | 129 | | 27 | (0) | | | | | Oreochromis niloticus | 127 | | 26 | (0) | | | | | Bison bison | 128 | 3.1 | 6 | 6 (2) | 2 | | 6 | | Mus spretus | 126 | | 4 | (0) | | | 4 | | Hydroides elegans | 126 | | 8 | 7 (1) | | | | | Schistosoma mansoni | 127 | | 8 | (0) | | | 2 | | Gorilla gorilla | 127 | | 2 | (0) | | | | | Staphylococcus aureus | 129 | | 1 | (0) | | | | | Total: 55 Organisms | | 5
genomes | 156,528,761 | 63,751,769 (19,576,037) | 23,402,596 | | 806,870 |
See summary for past builds:
|
