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Submitted SNP(ss) Details: ss342490325           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr19-17435851
RefSNP(rs#)rs755124
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4028
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342490325|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 CCCGGCTGCT GCCACTGCTG GGGGTCCCAT CTGGCCGGGC CTGCCCGCCC GCCCCGTTGG
 ACCCAGGCTC AGCCCGGGTG CCACCAAAGG GGAAGAGCTT GCCAGCATGG AAGGCTTTGG
 GCGGTGAGTG GCTGCGCTCA GAGTCCCGCC GGGTCTCGGG TGACTTGAGG AACTTGAAGC
 TGAGGAAGGC AGGCAGGCGG GTGTCGCTGC CTGTGGGTGA CTGGGCAGGG GGAGGCCGGG
 TGGTGGCTCC
 K
 GCCCCTGCAG CAGCCAGTGA GGATGTGGCC CCTGACGAGA GGAATTTGCC CTGCAGTGGG
 ATGATCTGCT TCAACTTCAT GACGTTGTTG GGTGCCAGCA GGGACCCTGG GCGCTTGGGC
 CGTTCAGGCC CGTGGCCACC CGCAGTGCTG CCCTTGGCCT TGGCAGAGGC CTTCTCGGAG
 GAGGTGGCAG GGTCCAGCCC AGAGCCCTCG GCCCTCGCCT CCTCTCGGCC ACCAGAATCA
 TGCTCCCGCC

  Submitted Frequency for ss342490325 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13002G/G=0.84079403
G/T=0.14997700
T/T=0.00922900
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342490325 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		40284028G=0.93023831
T=0.06976167G/G=0.86643493
G/T=0.12760675
T/T=0.00595829
Pr(chiSq=0.570,df=1)
=0.479		Genotype
Freq.

  Submitted individual genotype for ss342490325 back to top
There is no individual genotype data for ss342490325.

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