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Submitted SNP(ss) Details: ss342288459           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr9-137779026
RefSNP(rs#)rs17549193
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342288459|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AAATAAACAT AGTACACATT AGGTGGCAGG GCTAGACCTA AAGACAATTT GCCAAGACCA
 CTGCCAACAG CAGGGCAGTA TTCACTGGAG TCATGGATTG CACTTCTTGG ATTGTGCAGT
 GCACAACCTG CCTAACCATA CATGGAGGAC ACACCAGGCC AGGCCTCAGG TATAAAGACT
 TATACTGTCT GTAATGATGT TACTGCCTGT AACGATGCTC ACATTTCCTC CTGCACAGGA
 GATTCCCTGA
 Y
 GTTCCACAAC AACCAGTCCT TCTCCACCAA AGACCAGGAC AATGATCTTA ACACCGGAAA
 TTGTGCTGTG ATGTTTCAGG GAGCTTGGTG GTACAAAAAC TGCCATGTGT CAAACCTGAA
 TGGTCGCTAC CTCAGGGGGA CTCATGGCAG CTTTGCAAAT GGCATCAACT GGAAGTCGGG
 GAAAGGATAC AATTATAGCT ACAAGGTGTC AGAGATGAAG GTGCGACCTG CCTAGCCCAG
 GCCGGCCTCA

  Submitted Frequency for ss342288459 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.48023999
C/T=0.42518800
T/T=0.09457200
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342288459 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550C=0.69252747
T=0.30747253C/C=0.47912088
C/T=0.42681319
T/T=0.09406593
Pr(chiSq=0.011,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342288459 back to top
There is no individual genotype data for ss342288459.

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