Submitted SNP(ss) Details: ss11432421

Submitted SNP(ss) Details: ss11432421

Submitter
Handle	WI_SSAHASNP
Submitter SNP ID	chr2.NT_022184.12_22488728
RefSNP(rs#)	rs7556744
Submitted Batch ID	WI-WGS-200306-A
Submitted Date	Jul 03, 2003
Publication Cited	[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jul 3 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_022184
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WI-WGS-200306
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence:S213P604933FD12.T0position:-77quality:33

Fasta sequence (Legend)

 AGATGTCAGG AGTCCCGTGG TCAGAATCTC ACACTCAGGA AGTCTGTGTA TTCATAGCGA
 TGGATCTACC AGGAAGCCCT TTCAGGCAGA CCATGTTTGA AGGAAAGCAT CCTCCTCGGG
 GCCTCTGTTT TGAGCACACT GACTGATCAG GGCTCCAACC AGTATCCTTG TTTCCCTGCC
 GATCCTCTGT AGGTAGCCAT
 R
 GGATTTTTGG ACtttttttg ttttttgttt ttttgagaca gagtcttgct ctgtcaccca
 ggctaagagt gcggtagcac agtcagagct cactgcagcc tcaaactcct gggttcaagt
 gatcctcttg cctcagcctc ctaagtagct gagactacag gcacatgttg tcatgcctgt
 ctaatGACGT GTTGTTTTTC TAATCCTTCC CTTTCAGAAG TTGCTTTCAA GGTGGAGAAT
 TCCCAAATCA CTAAACTGCC TATTACAATA CTATCCTGAG ACAGGGAAGT GAAAGGTCTT
 GGTCCTGGAA GAGCCCTGCC ACGCCCCCTG TGAAGTCACT GGCCCAAAGG TGGGCCAGGA
 AACACATTTC CAC

Submitted Frequency for ss11432421

There is no frequency submission for ss11432421.

dbSNP summary of Genotypes for ss11432421

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	A=0.87610620	G=0.12389380	A/A=0.75221241 A/G=0.24778761	Pr(chiSq=0.525,df=1) =0.479	Genotype Freq.
HapMap-YRI	224	224	A=0.81696427	G=0.18303572	A/A=0.66964287 A/G=0.29464287 G/G=0.03571429	Pr(chiSq=0.025,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	A=0.82653064	G=0.17346939	A/A=0.67346936 A/G=0.30612245 G/G=0.02040816	Pr(chiSq=0.224,df=1) =0.655	Genotype Freq.
HAPMAP-CHB	82	82	A=0.98780489	G=0.01219512	A/A=0.97560978 A/G=0.02439024	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	166	166	A=0.99397588	G=0.00602410	A/A=0.98795182 A/G=0.01204819	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	172	172	A=0.80232561	G=0.19767442	A/A=0.65116280 A/G=0.30232558 G/G=0.04651163	Pr(chiSq=0.189,df=1) =0.752	Genotype Freq.
HAPMAP-LWK	180	180	A=0.82777780	G=0.17222223	A/A=0.68888891 A/G=0.27777779 G/G=0.03333334	Pr(chiSq=0.060,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	98	98	A=0.97959185	G=0.02040816	A/A=0.95918369 A/G=0.04081633	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	284	284	A=0.93309861	G=0.06690141	A/A=0.86619717 A/G=0.13380282	Pr(chiSq=0.094,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	A=0.94318181	G=0.05681818	A/A=0.88636363 A/G=0.11363637	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss11432421

There is no individual genotype data for ss11432421.

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