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Submitted SNP(ss) Details: ss7989688           
Submitter
HandleEGP_SNPS
Submitter SNP IDMSH4-001318
RefSNP(rs#)rs5745313
Submitted Batch IDMSH4-PDR90-040903
Submitted DateApr 14, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss7989688|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 AGGAGACTCC ACAGAGCCGC CCTTCGGTCC AGGTGGTCTC TGCATCCACC TGTCCTGGCA
 CGTCAGGAGC TGCGGGCGAC CGGAGCAGCA GCAGCAGCAG CCTTCCCTGC CCCGCGCCAA
 ACTCCCGGCC AGCTCAAGGC AAGGAGTGAT TGGGTGGAGG AGTCTCCTTG AGGCTAGAGG
 CCGGCAGTTC ATGGAGGCTC GGGGGCACGT GGGTGGTGGT TACCACAGTG AAGTTGTGAT
 TTGGTTGGGG CGTGA
 S
 ATCTGAGTGC CCTGGGAATT TGGTGAGTCT GGGTGATTAG AAGCCTTGAC TTTTCAAATT
 GGTTCTATTG CAAGACCTTG ACTGTGGATG GCTCAGTTCT GAGAAAGGCT GAAGTATCCC
 ATATAACGTC CCTCACAGTG TCTGACAAAT GACAGTTTGT GCGTGAGTTT GCTGATAGAA
 GTTGTGAGCT GATCTTTGGC TGCTGAATTT AATTCTCCAA ATCCTGCTAA GGTGGGATAA
 AATAGATTAA ATTGA

  Submitted Frequency for ss7989688 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180G=0.99444401
C=0.00555600
0.011 +/-0.015MSH4-PDR90-040903EGP_SNPS


  dbSNP summary of Genotypes for ss7989688 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180G=0.99444443
C=0.00555556G/G=0.98888886
C/G=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss7989688 back to top
There is no individual genotype data for ss7989688.

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