NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss4917475           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC25A-000766
RefSNP(rs#)rs3731486
Submitted Batch IDCDC25A-PDR90-071802
Submitted DateJul 19, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 19 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleG/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codetwo noncnn
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4917475|allelePos=256|len=511|taxid=9606|alleles='G/C'|mol=Genomic
 GAGAGGAGGA GAAGTTGCTT ACTGATTGGT GGATTCCGTT TGGCGCCAAC TAGGAAAGGG
 GGGCGGGGCA GCAGCTGGCC CCACTGAGCC GCTATTACCG CGAAAGGCCG GCCTGGCTGC
 GACAGCCTGG GTAAGAGGTG TAGGTCGGCT TGGTTTTCTG CTACCCGGAG CTGGGCAAGC
 GGGTGGGAGA ACAGCGAAGA CAGCGTGAGC CTGGGCCGTT GCCTCGAGGC TCTCGCCCGG
 CTTCTCTTGC CGACC
 S
 GCCACGTTTG TTTGGATTTA ATCTTCAGGT TGCCGGCGCC CGCCCGCCCG CTGGCCTCGC
 GGTGTGAGAG GGAAGCACCC GTGCCTGTGG CTGGTGGCTG GCGCCTGGAG GGTCCGCACA
 CCCGCCCGGC CGCGCCGCTT GCCCGCGGCA GCCGCGTCCC TGAACCGCGG AGTCGTGTTT
 GTGTTTGAcc cgcgggcgcc ggtggcgcgc ggccgaggcc ggtgtcggcg gggcggggcg
 gtcgcggcgg AGGCA

  Submitted Frequency for ss4917475 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90168C=0.99404800
G=0.00595200
0.012 +/-0.017CDC25A-PDR90-071802EGP_SNPS


  dbSNP summary of Genotypes for ss4917475 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90168168C=0.99404764
G=0.00595238C/C=0.98809522
C/G=0.01190476
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss4917475 back to top
There is no individual genotype data for ss4917475.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement