|
Status |
Public on Apr 02, 2014 |
Title |
UC Sample 133 |
Sample type |
RNA |
|
|
Source name |
Umbilical cord
|
Organism |
Homo sapiens |
Characteristics |
gender: Male ethnicity: Chinese batch: 4
|
Extracted molecule |
genomic DNA |
Extraction protocol |
A weighed amount of pulverized umbilical cord tissue was lysed and homogenised via Hyaluronidase solution treatment, additionof TNES lysis buffer and Proteinase K.
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Infinium HD assay protocol
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Data processing |
Background subtraction was performed in GenomeStudio then data was exported. Probes were filtered for detection p-value <0.05 and NBEADS>3 in R. Data was then loaded into Arraystudio version 6 (Omicsoft). All technical replicates were combined after sample QC. Data were normalised amongst samples using quantile normalization and subjected to Combat to removed batch effect.
|
|
|
Submission date |
Jan 03, 2014 |
Last update date |
Apr 02, 2014 |
Contact name |
Dennis Wang |
Organization name |
Singapore Institute for Clinical Sciences
|
Street address |
30 Medical Drive
|
City |
Singapore |
ZIP/Postal code |
117609 |
Country |
Singapore |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE53816 |
The effect of genotype and in utero environment on inter-individual variation in neonate DNA methylomes (methylomes) |
GSE54446 |
The effect of genotype and in utero environment on inter-individual variation in neonate DNA methylomes |
|