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    Pabp2 poly(A) binding protein nuclear 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664338, updated on 6-Jul-2024

    Summary

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    Gene symbol
    Pabp2
    Gene description
    poly(A) binding protein nuclear 1
    Locus tag
    TcasGA2_TC009984
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See Pabp2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (14031528..14033359)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (10706620..10708268, complement)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103313703 Neighboring gene La ribonucleoprotein translational regulator Achilles Neighboring gene SAGA-associated factor 29 Neighboring gene Fas associated factor casp Neighboring gene ionotropic receptor 75a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables poly(A) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein 2
    Names
    AUGUSTUS-3.0.2_09984
    GLEAN_09984
    Polyadenylate-binding protein 2-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      14031528..14033359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008197679.3 → XP_008195901.1  polyadenylate-binding protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008195901.1

      UniProtKB/TrEMBL
      D6WR37
      Conserved Domains (2) summary
      COG0724
      Location:44 → 214
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12550
      Location:99 → 174
      RRM_II_PABPN1; RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins

    2. XM_970347.5 → XP_975440.2  polyadenylate-binding protein 2 isoform X2

      Conserved Domains (2) summary
      COG0724
      Location:44 → 174
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12550
      Location:99 → 174
      RRM_II_PABPN1; RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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